Get supported splicing event types

Get supported splicing event types

Usage

getSplicingEventTypes(psi = NULL, acronymsAsNames = FALSE)

Arguments

psi

Data frame or matrix: alternative splicing quantification data

acronymsAsNames

Boolean: return acronyms as names?

Value

Named character vector with splicing event types

See also

Other functions for PSI quantification: filterPSI(), listSplicingAnnotations(), loadAnnotation(), plotRowStats(), quantifySplicing()

Examples

getSplicingEventTypes()
#>                                          Skipped exon 
#>                                                  "SE" 
#>                               Mutually exclusive exon 
#>                                                 "MXE" 
#>                            Alternative 5' splice site 
#>                                                "A5SS" 
#>                            Alternative 3' splice site 
#>                                                "A3SS" 
#>                                Alternative first exon 
#>                                                 "AFE" 
#>                                 Alternative last exon 
#>                                                 "ALE" 
#> Alternative first exon (exon-centred - less reliable) 
#>                                            "AFE_exon" 
#>  Alternative last exon (exon-centred - less reliable) 
#>                                            "ALE_exon"