Query information from Ensembl
Usage
queryEnsemblByGene(gene, species = NULL, assembly = NULL)
queryEnsemblByEvent(event, species = NULL, assembly = NULL, data = NULL)See also
Other functions to retrieve external information:
ensemblToUniprot(),
plotProtein(),
plotTranscripts()
Examples
queryEnsemblByGene("BRCA1", "human", "hg19")
#> $source
#> [1] "ensembl_havana"
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $species
#> [1] "human"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $strand
#> [1] -1
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $Transcript
#> strand Exon source is_canonical species id
#> 1 -1 c("ENSE0.... ensembl_havana 0 human ENST00000357654
#> 2 -1 c(1, 1, .... ensembl_havana 0 human ENST00000468300
#> 3 -1 c(-1, -1.... havana 0 human ENST00000586385
#> 4 -1 c(412772.... havana 0 human ENST00000591534
#> 5 -1 c("Exon".... havana 0 human ENST00000591849
#> 6 -1 c("17", .... ensembl_havana 0 human ENST00000493795
#> 7 -1 c("17", .... ensembl_havana 1 human ENST00000471181
#> 8 -1 c(412773.... havana 0 human ENST00000461221
#> 9 -1 c(412772.... havana 0 human ENST00000491747
#> 10 -1 c(1, 1, .... havana 0 human ENST00000484087
#> 11 -1 c(412772.... havana 0 human ENST00000478531
#> 12 -1 c(-1, -1.... havana 0 human ENST00000493919
#> 13 -1 c("GRCh3.... havana 0 human ENST00000472490
#> 14 -1 c(412568.... havana 0 human ENST00000487825
#> 15 -1 c(412438.... havana 0 human ENST00000461574
#> 16 -1 c("Exon".... havana 0 human ENST00000467274
#> 17 -1 c("GRCh3.... havana 0 human ENST00000412061
#> 18 -1 c("core".... havana 0 human ENST00000470026
#> 19 -1 c(412772.... havana 0 human ENST00000477152
#> 20 -1 c("GRCh3.... havana 0 human ENST00000492859
#> 21 -1 c(412772.... havana 0 human ENST00000497488
#> 22 -1 c(412772.... havana 0 human ENST00000494123
#> 23 -1 c(412568.... havana 0 human ENST00000473961
#> 24 -1 c("Exon".... havana 0 human ENST00000476777
#> 25 -1 c(412772.... havana 0 human ENST00000461798
#> 26 -1 c(412771.... havana 0 human ENST00000489037
#> 27 -1 c("GRCh3.... ensembl 0 human ENST00000354071
#> 28 -1 c("Exon".... ensembl 0 human ENST00000352993
#> 29 -1 c("human.... ensembl 0 human ENST00000346315
#> 30 -1 c(412760.... ensembl 0 human ENST00000351666
#> 31 -1 c("Exon".... ensembl 0 human ENST00000309486
#> length assembly_name Translation.db_type Translation.version Translation.end
#> 1 7094 GRCh37 core 3 41276113
#> 2 3273 GRCh37 core 1 41276113
#> 3 781 GRCh37 core 1 41277202
#> 4 1282 GRCh37 core 1 41226495
#> 5 563 GRCh37 core 1 41202109
#> 6 5732 GRCh37 core 1 41258543
#> 7 5936 GRCh37 core 2 41276113
#> 8 5693 GRCh37 core 1 41276113
#> 9 2379 GRCh37 core 2 41276113
#> 10 1495 GRCh37 core 1 41256933
#> 11 1972 GRCh37 core 1 41276113
#> 12 1948 GRCh37 core 1 41258543
#> 13 561 GRCh37 <NA> NA NA
#> 14 800 GRCh37 core 1 41256933
#> 15 726 GRCh37 core 1 41243841
#> 16 4497 GRCh37 <NA> NA NA
#> 17 1312 GRCh37 core 3 41247883
#> 18 2108 GRCh37 core 1 41276113
#> 19 1980 GRCh37 core 1 41276113
#> 20 1584 GRCh37 core 1 41276113
#> 21 779 GRCh37 core 1 41246659
#> 22 1612 GRCh37 core 1 41276113
#> 23 958 GRCh37 core 1 41256908
#> 24 769 GRCh37 core 1 41276113
#> 25 582 GRCh37 core 1 41276113
#> 26 455 GRCh37 core 1 41276113
#> 27 6411 GRCh37 core 6 41276113
#> 28 3780 GRCh37 core 5 41276113
#> 29 6451 GRCh37 core 4 41276113
#> 30 3444 GRCh37 core 3 41276113
#> 31 7114 GRCh37 core 4 41246659
#> Translation.object_type Translation.Parent Translation.start Translation.id
#> 1 Translation ENST00000357654 41197695 ENSP00000350283
#> 2 Translation ENST00000468300 41197801 ENSP00000417148
#> 3 Translation ENST00000586385 41197695 ENSP00000465818
#> 4 Translation ENST00000591534 41197695 ENSP00000467329
#> 5 Translation ENST00000591849 41197695 ENSP00000465347
#> 6 Translation ENST00000493795 41197695 ENSP00000418775
#> 7 Translation ENST00000471181 41197695 ENSP00000418960
#> 8 Translation ENST00000461221 41256972 ENSP00000418548
#> 9 Translation ENST00000491747 41197695 ENSP00000420705
#> 10 Translation ENST00000484087 41215361 ENSP00000419481
#> 11 Translation ENST00000478531 41215361 ENSP00000420412
#> 12 Translation ENST00000493919 41215377 ENSP00000418819
#> 13 <NA> <NA> NA <NA>
#> 14 Translation ENST00000487825 41228505 ENSP00000418212
#> 15 Translation ENST00000461574 41228554 ENSP00000417241
#> 16 <NA> <NA> NA <NA>
#> 17 Translation ENST00000412061 41245587 ENSP00000397145
#> 18 Translation ENST00000470026 41245601 ENSP00000419274
#> 19 Translation ENST00000477152 41245603 ENSP00000419988
#> 20 Translation ENST00000492859 41262552 ENSP00000420253
#> 21 Translation ENST00000497488 41246129 ENSP00000418986
#> 22 Translation ENST00000494123 41246129 ENSP00000419103
#> 23 Translation ENST00000473961 41246187 ENSP00000420201
#> 24 Translation ENST00000476777 41247863 ENSP00000417554
#> 25 Translation ENST00000461798 41256972 ENSP00000417988
#> 26 Translation ENST00000489037 41256206 ENSP00000420781
#> 27 Translation ENST00000354071 41197695 ENSP00000326002
#> 28 Translation ENST00000352993 41197695 ENSP00000312236
#> 29 Translation ENST00000346315 41197695 ENSP00000246907
#> 30 Translation ENST00000351666 41197695 ENSP00000338007
#> 31 Translation ENST00000309486 41197695 ENSP00000310938
#> Translation.species Translation.length db_type end version
#> 1 human 1863 core 41277387 3
#> 2 human 699 core 41277468 1
#> 3 human 173 core 41277346 1
#> 4 human 354 core 41277346 1
#> 5 human 96 core 41277346 1
#> 6 human 1816 core 41277419 1
#> 7 human 1884 core 41277500 2
#> 8 human 63 core 41277305 1
#> 9 human 759 core 41277373 2
#> 10 human 498 core 41256933 1
#> 11 human 623 core 41277376 1
#> 12 human 572 core 41277419 1
#> 13 <NA> NA core 41223083 1
#> 14 human 266 core 41256933 1
#> 15 human 242 core 41243841 1
#> 16 <NA> NA core 41277332 1
#> 17 human 437 core 41247883 3
#> 18 human 649 core 41277340 1
#> 19 human 622 core 41277381 1
#> 20 human 59 core 41277317 1
#> 21 human 177 core 41277317 1
#> 22 human 473 core 41277467 1
#> 23 human 319 core 41256908 1
#> 24 human 222 core 41277370 1
#> 25 human 63 core 41277387 1
#> 26 human 98 core 41277338 1
#> 27 human 1598 core 41277500 3
#> 28 human 721 core 41277500 3
#> 29 human 1624 core 41277468 3
#> 30 human 680 core 41276132 3
#> 31 human 1567 core 41277468 4
#> seq_region_name object_type Parent biotype
#> 1 17 Transcript ENSG00000012048 protein_coding
#> 2 17 Transcript ENSG00000012048 protein_coding
#> 3 17 Transcript ENSG00000012048 protein_coding
#> 4 17 Transcript ENSG00000012048 protein_coding
#> 5 17 Transcript ENSG00000012048 protein_coding
#> 6 17 Transcript ENSG00000012048 protein_coding
#> 7 17 Transcript ENSG00000012048 protein_coding
#> 8 17 Transcript ENSG00000012048 nonsense_mediated_decay
#> 9 17 Transcript ENSG00000012048 protein_coding
#> 10 17 Transcript ENSG00000012048 protein_coding
#> 11 17 Transcript ENSG00000012048 protein_coding
#> 12 17 Transcript ENSG00000012048 protein_coding
#> 13 17 Transcript ENSG00000012048 retained_intron
#> 14 17 Transcript ENSG00000012048 protein_coding
#> 15 17 Transcript ENSG00000012048 protein_coding
#> 16 17 Transcript ENSG00000012048 retained_intron
#> 17 17 Transcript ENSG00000012048 non_stop_decay
#> 18 17 Transcript ENSG00000012048 protein_coding
#> 19 17 Transcript ENSG00000012048 protein_coding
#> 20 17 Transcript ENSG00000012048 nonsense_mediated_decay
#> 21 17 Transcript ENSG00000012048 protein_coding
#> 22 17 Transcript ENSG00000012048 protein_coding
#> 23 17 Transcript ENSG00000012048 protein_coding
#> 24 17 Transcript ENSG00000012048 protein_coding
#> 25 17 Transcript ENSG00000012048 nonsense_mediated_decay
#> 26 17 Transcript ENSG00000012048 protein_coding
#> 27 17 Transcript ENSG00000012048 protein_coding
#> 28 17 Transcript ENSG00000012048 protein_coding
#> 29 17 Transcript ENSG00000012048 protein_coding
#> 30 17 Transcript ENSG00000012048 protein_coding
#> 31 17 Transcript ENSG00000012048 protein_coding
#> display_name start logic_name gencode_primary
#> 1 BRCA1-001 41196312 ensembl_havana_transcript 0
#> 2 BRCA1-007 41196822 ensembl_havana_transcript 0
#> 3 BRCA1-023 41197580 havana_homo_sapiens_37 0
#> 4 BRCA1-024 41197580 havana_homo_sapiens_37 0
#> 5 BRCA1-025 41197580 havana_homo_sapiens_37 0
#> 6 BRCA1-006 41197646 ensembl_havana_transcript 0
#> 7 BRCA1-005 41197646 ensembl_havana_transcript 0
#> 8 BRCA1-010 41197695 havana_homo_sapiens_37 0
#> 9 BRCA1-014 41197695 havana_homo_sapiens_37 0
#> 10 BRCA1-015 41215361 havana_homo_sapiens_37 0
#> 11 BRCA1-009 41215361 havana_homo_sapiens_37 0
#> 12 BRCA1-008 41215377 havana_homo_sapiens_37 0
#> 13 BRCA1-021 41219291 havana_homo_sapiens_37 0
#> 14 BRCA1-019 41228505 havana_homo_sapiens_37 0
#> 15 BRCA1-022 41228554 havana_homo_sapiens_37 0
#> 16 BRCA1-012 41243115 havana_homo_sapiens_37 0
#> 17 BRCA1-026 41245587 havana_homo_sapiens_37 0
#> 18 BRCA1-011 41245601 havana_homo_sapiens_37 0
#> 19 BRCA1-004 41245603 havana_homo_sapiens_37 0
#> 20 BRCA1-002 41246129 havana_homo_sapiens_37 0
#> 21 BRCA1-003 41246129 havana_homo_sapiens_37 0
#> 22 BRCA1-013 41246129 havana_homo_sapiens_37 0
#> 23 BRCA1-018 41246187 havana_homo_sapiens_37 0
#> 24 BRCA1-017 41247863 havana_homo_sapiens_37 0
#> 25 BRCA1-020 41251848 havana_homo_sapiens_37 0
#> 26 BRCA1-016 41256206 havana_homo_sapiens_37 0
#> 27 BRCA1-205 41196313 ensembl_homo_sapiens_37 0
#> 28 BRCA1-204 41196313 ensembl_homo_sapiens_37 0
#> 29 BRCA1-202 41196313 ensembl_homo_sapiens_37 0
#> 30 BRCA1-203 41196313 ensembl_homo_sapiens_37 0
#> 31 BRCA1-201 41196313 ensembl_homo_sapiens_37 0
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $start
#> [1] 41196312
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $db_type
#> [1] "core"
#>
#> $seq_region_name
#> [1] "17"
#>
#> $version
#> [1] 15
#>
#> $end
#> [1] 41277500
#>
#> $object_type
#> [1] "Gene"
#>
queryEnsemblByGene("ENSG00000139618")
#> $biotype
#> [1] "protein_coding"
#>
#> $end
#> [1] 32973805
#>
#> $Transcript
#> Translation.version Translation.Parent Translation.start Translation.db_type
#> 1 3 ENST00000380152 32890598 core
#> 2 2 ENST00000530893 32899266 core
#> 3 1 ENST00000528762 32945108 core
#> 4 1 ENST00000470094 32953977 core
#> 5 NA <NA> NA <NA>
#> 6 1 ENST00000544455 32890598 core
#> Translation.id Translation.end Translation.length Translation.species
#> 1 ENSP00000369497 32972907 3418 homo_sapiens
#> 2 ENSP00000435699 32907428 481 homo_sapiens
#> 3 ENSP00000433168 32950807 64 homo_sapiens
#> 4 ENSP00000434898 32970229 186 homo_sapiens
#> 5 <NA> NA NA <NA>
#> 6 ENSP00000439902 32972907 3418 homo_sapiens
#> Translation.object_type start strand assembly_name display_name
#> 1 Translation 32889611 1 GRCh37 BRCA2-001
#> 2 Translation 32889642 1 GRCh37 BRCA2-003
#> 3 Translation 32945108 1 GRCh37 BRCA2-005
#> 4 Translation 32953977 1 GRCh37 BRCA2-002
#> 5 <NA> 32970946 1 GRCh37 BRCA2-006
#> 6 Translation 32889617 1 GRCh37 BRCA2-201
#> Parent length object_type end biotype db_type
#> 1 ENSG00000139618 10930 Transcript 32973347 protein_coding core
#> 2 ENSG00000139618 2011 Transcript 32907428 protein_coding core
#> 3 ENSG00000139618 495 Transcript 32953632 nonsense_mediated_decay core
#> 4 ENSG00000139618 842 Transcript 32972409 nonsense_mediated_decay core
#> 5 ENSG00000139618 523 Transcript 32972585 retained_intron core
#> 6 ENSG00000139618 10984 Transcript 32973805 protein_coding core
#> id seq_region_name version species source
#> 1 ENST00000380152 13 3 homo_sapiens ensembl_havana
#> 2 ENST00000530893 13 2 homo_sapiens havana
#> 3 ENST00000528762 13 1 homo_sapiens havana
#> 4 ENST00000470094 13 1 homo_sapiens havana
#> 5 ENST00000533776 13 1 homo_sapiens havana
#> 6 ENST00000544455 13 1 homo_sapiens ensembl
#> Exon logic_name gencode_primary is_canonical
#> 1 c(1, 1, .... ensembl_havana_transcript 0 0
#> 2 c("GRCh3.... havana_homo_sapiens_37 0 0
#> 3 c("GRCh3.... havana_homo_sapiens_37 0 0
#> 4 c(1, 1, .... havana_homo_sapiens_37 0 0
#> 5 c(1, 1),.... havana_homo_sapiens_37 0 0
#> 6 c("Exon".... ensembl_homo_sapiens_37 0 1
#>
#> $object_type
#> [1] "Gene"
#>
#> $description
#> [1] "breast cancer 2, early onset [Source:HGNC Symbol;Acc:1101]"
#>
#> $display_name
#> [1] "BRCA2"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $strand
#> [1] 1
#>
#> $start
#> [1] 32889611
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $species
#> [1] "homo_sapiens"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $version
#> [1] 10
#>
#> $canonical_transcript
#> [1] "ENST00000544455.1"
#>
#> $seq_region_name
#> [1] "13"
#>
#> $db_type
#> [1] "core"
#>
#> $id
#> [1] "ENSG00000139618"
#>
event <- "SE_17_-_41251792_41249306_41249261_41246877_BRCA1"
queryEnsemblByEvent(event, species="human", assembly="hg19")
#> $species
#> [1] "human"
#>
#> $strand
#> [1] -1
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $Transcript
#> strand gencode_primary species source Exon id
#> 1 -1 0 human ensembl_havana c(-1, -1.... ENST00000357654
#> 2 -1 0 human ensembl_havana c("17", .... ENST00000468300
#> 3 -1 0 human havana c(1, 1, .... ENST00000586385
#> 4 -1 0 human havana c(1, 1, .... ENST00000591534
#> 5 -1 0 human havana c("ENSE0.... ENST00000591849
#> 6 -1 0 human ensembl_havana c(412774.... ENST00000493795
#> 7 -1 0 human ensembl_havana c("GRCh3.... ENST00000471181
#> 8 -1 0 human havana c("ENSE0.... ENST00000461221
#> 9 -1 0 human havana c("Exon".... ENST00000491747
#> 10 -1 0 human havana c("GRCh3.... ENST00000484087
#> 11 -1 0 human havana c("Exon".... ENST00000478531
#> 12 -1 0 human havana c("GRCh3.... ENST00000493919
#> 13 -1 0 human havana c("human.... ENST00000472490
#> 14 -1 0 human havana c("core".... ENST00000487825
#> 15 -1 0 human havana c(412434.... ENST00000461574
#> 16 -1 0 human havana c("17", .... ENST00000467274
#> 17 -1 0 human havana c("Exon".... ENST00000412061
#> 18 -1 0 human havana c("human.... ENST00000470026
#> 19 -1 0 human havana c(412772.... ENST00000477152
#> 20 -1 0 human havana c(412772.... ENST00000492859
#> 21 -1 0 human havana c("17", .... ENST00000497488
#> 22 -1 0 human havana c("human.... ENST00000494123
#> 23 -1 0 human havana c("ENSE0.... ENST00000473961
#> 24 -1 0 human havana c(1, 1, .... ENST00000476777
#> 25 -1 0 human havana c("GRCh3.... ENST00000461798
#> 26 -1 0 human havana c(-1, -1.... ENST00000489037
#> 27 -1 0 human ensembl c("ENSE0.... ENST00000354071
#> 28 -1 0 human ensembl c(412772.... ENST00000352993
#> 29 -1 0 human ensembl c("human.... ENST00000346315
#> 30 -1 0 human ensembl c(1, 1, .... ENST00000351666
#> 31 -1 0 human ensembl c("Exon".... ENST00000309486
#> db_type logic_name is_canonical seq_region_name
#> 1 core ensembl_havana_transcript 0 17
#> 2 core ensembl_havana_transcript 0 17
#> 3 core havana_homo_sapiens_37 0 17
#> 4 core havana_homo_sapiens_37 0 17
#> 5 core havana_homo_sapiens_37 0 17
#> 6 core ensembl_havana_transcript 0 17
#> 7 core ensembl_havana_transcript 1 17
#> 8 core havana_homo_sapiens_37 0 17
#> 9 core havana_homo_sapiens_37 0 17
#> 10 core havana_homo_sapiens_37 0 17
#> 11 core havana_homo_sapiens_37 0 17
#> 12 core havana_homo_sapiens_37 0 17
#> 13 core havana_homo_sapiens_37 0 17
#> 14 core havana_homo_sapiens_37 0 17
#> 15 core havana_homo_sapiens_37 0 17
#> 16 core havana_homo_sapiens_37 0 17
#> 17 core havana_homo_sapiens_37 0 17
#> 18 core havana_homo_sapiens_37 0 17
#> 19 core havana_homo_sapiens_37 0 17
#> 20 core havana_homo_sapiens_37 0 17
#> 21 core havana_homo_sapiens_37 0 17
#> 22 core havana_homo_sapiens_37 0 17
#> 23 core havana_homo_sapiens_37 0 17
#> 24 core havana_homo_sapiens_37 0 17
#> 25 core havana_homo_sapiens_37 0 17
#> 26 core havana_homo_sapiens_37 0 17
#> 27 core ensembl_homo_sapiens_37 0 17
#> 28 core ensembl_homo_sapiens_37 0 17
#> 29 core ensembl_homo_sapiens_37 0 17
#> 30 core ensembl_homo_sapiens_37 0 17
#> 31 core ensembl_homo_sapiens_37 0 17
#> biotype Parent object_type assembly_name version
#> 1 protein_coding ENSG00000012048 Transcript GRCh37 3
#> 2 protein_coding ENSG00000012048 Transcript GRCh37 1
#> 3 protein_coding ENSG00000012048 Transcript GRCh37 1
#> 4 protein_coding ENSG00000012048 Transcript GRCh37 1
#> 5 protein_coding ENSG00000012048 Transcript GRCh37 1
#> 6 protein_coding ENSG00000012048 Transcript GRCh37 1
#> 7 protein_coding ENSG00000012048 Transcript GRCh37 2
#> 8 nonsense_mediated_decay ENSG00000012048 Transcript GRCh37 1
#> 9 protein_coding ENSG00000012048 Transcript GRCh37 2
#> 10 protein_coding ENSG00000012048 Transcript GRCh37 1
#> 11 protein_coding ENSG00000012048 Transcript GRCh37 1
#> 12 protein_coding ENSG00000012048 Transcript GRCh37 1
#> 13 retained_intron ENSG00000012048 Transcript GRCh37 1
#> 14 protein_coding ENSG00000012048 Transcript GRCh37 1
#> 15 protein_coding ENSG00000012048 Transcript GRCh37 1
#> 16 retained_intron ENSG00000012048 Transcript GRCh37 1
#> 17 non_stop_decay ENSG00000012048 Transcript GRCh37 3
#> 18 protein_coding ENSG00000012048 Transcript GRCh37 1
#> 19 protein_coding ENSG00000012048 Transcript GRCh37 1
#> 20 nonsense_mediated_decay ENSG00000012048 Transcript GRCh37 1
#> 21 protein_coding ENSG00000012048 Transcript GRCh37 1
#> 22 protein_coding ENSG00000012048 Transcript GRCh37 1
#> 23 protein_coding ENSG00000012048 Transcript GRCh37 1
#> 24 protein_coding ENSG00000012048 Transcript GRCh37 1
#> 25 nonsense_mediated_decay ENSG00000012048 Transcript GRCh37 1
#> 26 protein_coding ENSG00000012048 Transcript GRCh37 1
#> 27 protein_coding ENSG00000012048 Transcript GRCh37 3
#> 28 protein_coding ENSG00000012048 Transcript GRCh37 3
#> 29 protein_coding ENSG00000012048 Transcript GRCh37 3
#> 30 protein_coding ENSG00000012048 Transcript GRCh37 3
#> 31 protein_coding ENSG00000012048 Transcript GRCh37 4
#> length Translation.version Translation.length Translation.start
#> 1 7094 3 1863 41197695
#> 2 3273 1 699 41197801
#> 3 781 1 173 41197695
#> 4 1282 1 354 41197695
#> 5 563 1 96 41197695
#> 6 5732 1 1816 41197695
#> 7 5936 2 1884 41197695
#> 8 5693 1 63 41256972
#> 9 2379 2 759 41197695
#> 10 1495 1 498 41215361
#> 11 1972 1 623 41215361
#> 12 1948 1 572 41215377
#> 13 561 NA NA NA
#> 14 800 1 266 41228505
#> 15 726 1 242 41228554
#> 16 4497 NA NA NA
#> 17 1312 3 437 41245587
#> 18 2108 1 649 41245601
#> 19 1980 1 622 41245603
#> 20 1584 1 59 41262552
#> 21 779 1 177 41246129
#> 22 1612 1 473 41246129
#> 23 958 1 319 41246187
#> 24 769 1 222 41247863
#> 25 582 1 63 41256972
#> 26 455 1 98 41256206
#> 27 6411 6 1598 41197695
#> 28 3780 5 721 41197695
#> 29 6451 4 1624 41197695
#> 30 3444 3 680 41197695
#> 31 7114 4 1567 41197695
#> Translation.end Translation.id Translation.db_type Translation.Parent
#> 1 41276113 ENSP00000350283 core ENST00000357654
#> 2 41276113 ENSP00000417148 core ENST00000468300
#> 3 41277202 ENSP00000465818 core ENST00000586385
#> 4 41226495 ENSP00000467329 core ENST00000591534
#> 5 41202109 ENSP00000465347 core ENST00000591849
#> 6 41258543 ENSP00000418775 core ENST00000493795
#> 7 41276113 ENSP00000418960 core ENST00000471181
#> 8 41276113 ENSP00000418548 core ENST00000461221
#> 9 41276113 ENSP00000420705 core ENST00000491747
#> 10 41256933 ENSP00000419481 core ENST00000484087
#> 11 41276113 ENSP00000420412 core ENST00000478531
#> 12 41258543 ENSP00000418819 core ENST00000493919
#> 13 NA <NA> <NA> <NA>
#> 14 41256933 ENSP00000418212 core ENST00000487825
#> 15 41243841 ENSP00000417241 core ENST00000461574
#> 16 NA <NA> <NA> <NA>
#> 17 41247883 ENSP00000397145 core ENST00000412061
#> 18 41276113 ENSP00000419274 core ENST00000470026
#> 19 41276113 ENSP00000419988 core ENST00000477152
#> 20 41276113 ENSP00000420253 core ENST00000492859
#> 21 41246659 ENSP00000418986 core ENST00000497488
#> 22 41276113 ENSP00000419103 core ENST00000494123
#> 23 41256908 ENSP00000420201 core ENST00000473961
#> 24 41276113 ENSP00000417554 core ENST00000476777
#> 25 41276113 ENSP00000417988 core ENST00000461798
#> 26 41276113 ENSP00000420781 core ENST00000489037
#> 27 41276113 ENSP00000326002 core ENST00000354071
#> 28 41276113 ENSP00000312236 core ENST00000352993
#> 29 41276113 ENSP00000246907 core ENST00000346315
#> 30 41276113 ENSP00000338007 core ENST00000351666
#> 31 41246659 ENSP00000310938 core ENST00000309486
#> Translation.object_type Translation.species start display_name end
#> 1 Translation human 41196312 BRCA1-001 41277387
#> 2 Translation human 41196822 BRCA1-007 41277468
#> 3 Translation human 41197580 BRCA1-023 41277346
#> 4 Translation human 41197580 BRCA1-024 41277346
#> 5 Translation human 41197580 BRCA1-025 41277346
#> 6 Translation human 41197646 BRCA1-006 41277419
#> 7 Translation human 41197646 BRCA1-005 41277500
#> 8 Translation human 41197695 BRCA1-010 41277305
#> 9 Translation human 41197695 BRCA1-014 41277373
#> 10 Translation human 41215361 BRCA1-015 41256933
#> 11 Translation human 41215361 BRCA1-009 41277376
#> 12 Translation human 41215377 BRCA1-008 41277419
#> 13 <NA> <NA> 41219291 BRCA1-021 41223083
#> 14 Translation human 41228505 BRCA1-019 41256933
#> 15 Translation human 41228554 BRCA1-022 41243841
#> 16 <NA> <NA> 41243115 BRCA1-012 41277332
#> 17 Translation human 41245587 BRCA1-026 41247883
#> 18 Translation human 41245601 BRCA1-011 41277340
#> 19 Translation human 41245603 BRCA1-004 41277381
#> 20 Translation human 41246129 BRCA1-002 41277317
#> 21 Translation human 41246129 BRCA1-003 41277317
#> 22 Translation human 41246129 BRCA1-013 41277467
#> 23 Translation human 41246187 BRCA1-018 41256908
#> 24 Translation human 41247863 BRCA1-017 41277370
#> 25 Translation human 41251848 BRCA1-020 41277387
#> 26 Translation human 41256206 BRCA1-016 41277338
#> 27 Translation human 41196313 BRCA1-205 41277500
#> 28 Translation human 41196313 BRCA1-204 41277500
#> 29 Translation human 41196313 BRCA1-202 41277468
#> 30 Translation human 41196313 BRCA1-203 41276132
#> 31 Translation human 41196313 BRCA1-201 41277468
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $object_type
#> [1] "Gene"
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $seq_region_name
#> [1] "17"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $db_type
#> [1] "core"
#>
#> $end
#> [1] 41277500
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $start
#> [1] 41196312
#>
#> $version
#> [1] 15
#>
#> $assembly_name
#> [1] "GRCh37"
#>