Query information from Ensembl
Usage
queryEnsemblByGene(gene, species = NULL, assembly = NULL)
queryEnsemblByEvent(event, species = NULL, assembly = NULL, data = NULL)See also
Other functions to retrieve external information:
ensemblToUniprot(),
plotProtein(),
plotTranscripts()
Examples
queryEnsemblByGene("BRCA1", "human", "hg19")
#> $display_name
#> [1] "BRCA1"
#>
#> $object_type
#> [1] "Gene"
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $version
#> [1] 15
#>
#> $start
#> [1] 41196312
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $strand
#> [1] -1
#>
#> $db_type
#> [1] "core"
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $species
#> [1] "human"
#>
#> $seq_region_name
#> [1] "17"
#>
#> $Transcript
#> version biotype length start display_name object_type
#> 1 3 protein_coding 7094 41196312 BRCA1-001 Transcript
#> 2 1 protein_coding 3273 41196822 BRCA1-007 Transcript
#> 3 1 protein_coding 781 41197580 BRCA1-023 Transcript
#> 4 1 protein_coding 1282 41197580 BRCA1-024 Transcript
#> 5 1 protein_coding 563 41197580 BRCA1-025 Transcript
#> 6 1 protein_coding 5732 41197646 BRCA1-006 Transcript
#> 7 2 protein_coding 5936 41197646 BRCA1-005 Transcript
#> 8 1 nonsense_mediated_decay 5693 41197695 BRCA1-010 Transcript
#> 9 2 protein_coding 2379 41197695 BRCA1-014 Transcript
#> 10 1 protein_coding 1495 41215361 BRCA1-015 Transcript
#> 11 1 protein_coding 1972 41215361 BRCA1-009 Transcript
#> 12 1 protein_coding 1948 41215377 BRCA1-008 Transcript
#> 13 1 retained_intron 561 41219291 BRCA1-021 Transcript
#> 14 1 protein_coding 800 41228505 BRCA1-019 Transcript
#> 15 1 protein_coding 726 41228554 BRCA1-022 Transcript
#> 16 1 retained_intron 4497 41243115 BRCA1-012 Transcript
#> 17 3 non_stop_decay 1312 41245587 BRCA1-026 Transcript
#> 18 1 protein_coding 2108 41245601 BRCA1-011 Transcript
#> 19 1 protein_coding 1980 41245603 BRCA1-004 Transcript
#> 20 1 nonsense_mediated_decay 1584 41246129 BRCA1-002 Transcript
#> 21 1 protein_coding 779 41246129 BRCA1-003 Transcript
#> 22 1 protein_coding 1612 41246129 BRCA1-013 Transcript
#> 23 1 protein_coding 958 41246187 BRCA1-018 Transcript
#> 24 1 protein_coding 769 41247863 BRCA1-017 Transcript
#> 25 1 nonsense_mediated_decay 582 41251848 BRCA1-020 Transcript
#> 26 1 protein_coding 455 41256206 BRCA1-016 Transcript
#> 27 3 protein_coding 6411 41196313 BRCA1-205 Transcript
#> 28 3 protein_coding 3780 41196313 BRCA1-204 Transcript
#> 29 3 protein_coding 6451 41196313 BRCA1-202 Transcript
#> 30 3 protein_coding 3444 41196313 BRCA1-203 Transcript
#> 31 4 protein_coding 7114 41196313 BRCA1-201 Transcript
#> Translation.start Translation.length Translation.end Translation.version
#> 1 41197695 1863 41276113 3
#> 2 41197801 699 41276113 1
#> 3 41197695 173 41277202 1
#> 4 41197695 354 41226495 1
#> 5 41197695 96 41202109 1
#> 6 41197695 1816 41258543 1
#> 7 41197695 1884 41276113 2
#> 8 41256972 63 41276113 1
#> 9 41197695 759 41276113 2
#> 10 41215361 498 41256933 1
#> 11 41215361 623 41276113 1
#> 12 41215377 572 41258543 1
#> 13 NA NA NA NA
#> 14 41228505 266 41256933 1
#> 15 41228554 242 41243841 1
#> 16 NA NA NA NA
#> 17 41245587 437 41247883 3
#> 18 41245601 649 41276113 1
#> 19 41245603 622 41276113 1
#> 20 41262552 59 41276113 1
#> 21 41246129 177 41246659 1
#> 22 41246129 473 41276113 1
#> 23 41246187 319 41256908 1
#> 24 41247863 222 41276113 1
#> 25 41256972 63 41276113 1
#> 26 41256206 98 41276113 1
#> 27 41197695 1598 41276113 6
#> 28 41197695 721 41276113 5
#> 29 41197695 1624 41276113 4
#> 30 41197695 680 41276113 3
#> 31 41197695 1567 41246659 4
#> Translation.species Translation.Parent Translation.db_type
#> 1 human ENST00000357654 core
#> 2 human ENST00000468300 core
#> 3 human ENST00000586385 core
#> 4 human ENST00000591534 core
#> 5 human ENST00000591849 core
#> 6 human ENST00000493795 core
#> 7 human ENST00000471181 core
#> 8 human ENST00000461221 core
#> 9 human ENST00000491747 core
#> 10 human ENST00000484087 core
#> 11 human ENST00000478531 core
#> 12 human ENST00000493919 core
#> 13 <NA> <NA> <NA>
#> 14 human ENST00000487825 core
#> 15 human ENST00000461574 core
#> 16 <NA> <NA> <NA>
#> 17 human ENST00000412061 core
#> 18 human ENST00000470026 core
#> 19 human ENST00000477152 core
#> 20 human ENST00000492859 core
#> 21 human ENST00000497488 core
#> 22 human ENST00000494123 core
#> 23 human ENST00000473961 core
#> 24 human ENST00000476777 core
#> 25 human ENST00000461798 core
#> 26 human ENST00000489037 core
#> 27 human ENST00000354071 core
#> 28 human ENST00000352993 core
#> 29 human ENST00000346315 core
#> 30 human ENST00000351666 core
#> 31 human ENST00000309486 core
#> Translation.object_type Translation.id Exon is_canonical
#> 1 Translation ENSP00000350283 c("ENSE0.... 0
#> 2 Translation ENSP00000417148 c("GRCh3.... 0
#> 3 Translation ENSP00000465818 c("GRCh3.... 0
#> 4 Translation ENSP00000467329 c("GRCh3.... 0
#> 5 Translation ENSP00000465347 c(1, 1, .... 0
#> 6 Translation ENSP00000418775 c(412772.... 0
#> 7 Translation ENSP00000418960 c(1, 1, .... 1
#> 8 Translation ENSP00000418548 c(412773.... 0
#> 9 Translation ENSP00000420705 c("ENSE0.... 0
#> 10 Translation ENSP00000419481 c("GRCh3.... 0
#> 11 Translation ENSP00000420412 c("GRCh3.... 0
#> 12 Translation ENSP00000418819 c("GRCh3.... 0
#> 13 <NA> <NA> c(412230.... 0
#> 14 Translation ENSP00000418212 c(-1, -1.... 0
#> 15 Translation ENSP00000417241 c(-1, -1.... 0
#> 16 <NA> <NA> c("17", .... 0
#> 17 Translation ENSP00000397145 c(1, 1),.... 0
#> 18 Translation ENSP00000419274 c("core".... 0
#> 19 Translation ENSP00000419988 c(1, 1, .... 0
#> 20 Translation ENSP00000420253 c(1, 1, .... 0
#> 21 Translation ENSP00000418986 c(1, 1),.... 0
#> 22 Translation ENSP00000419103 c(412774.... 0
#> 23 Translation ENSP00000420201 c(412568.... 0
#> 24 Translation ENSP00000417554 c(412773.... 0
#> 25 Translation ENSP00000417988 c("core".... 0
#> 26 Translation ENSP00000420781 c(1, 1, .... 0
#> 27 Translation ENSP00000326002 c(-1, -1.... 0
#> 28 Translation ENSP00000312236 c(412772.... 0
#> 29 Translation ENSP00000246907 c(1, 1, .... 0
#> 30 Translation ENSP00000338007 c(-1, -1.... 0
#> 31 Translation ENSP00000310938 c("human.... 0
#> Parent end source db_type gencode_primary
#> 1 ENSG00000012048 41277387 ensembl_havana core 0
#> 2 ENSG00000012048 41277468 ensembl_havana core 0
#> 3 ENSG00000012048 41277346 havana core 0
#> 4 ENSG00000012048 41277346 havana core 0
#> 5 ENSG00000012048 41277346 havana core 0
#> 6 ENSG00000012048 41277419 ensembl_havana core 0
#> 7 ENSG00000012048 41277500 ensembl_havana core 0
#> 8 ENSG00000012048 41277305 havana core 0
#> 9 ENSG00000012048 41277373 havana core 0
#> 10 ENSG00000012048 41256933 havana core 0
#> 11 ENSG00000012048 41277376 havana core 0
#> 12 ENSG00000012048 41277419 havana core 0
#> 13 ENSG00000012048 41223083 havana core 0
#> 14 ENSG00000012048 41256933 havana core 0
#> 15 ENSG00000012048 41243841 havana core 0
#> 16 ENSG00000012048 41277332 havana core 0
#> 17 ENSG00000012048 41247883 havana core 0
#> 18 ENSG00000012048 41277340 havana core 0
#> 19 ENSG00000012048 41277381 havana core 0
#> 20 ENSG00000012048 41277317 havana core 0
#> 21 ENSG00000012048 41277317 havana core 0
#> 22 ENSG00000012048 41277467 havana core 0
#> 23 ENSG00000012048 41256908 havana core 0
#> 24 ENSG00000012048 41277370 havana core 0
#> 25 ENSG00000012048 41277387 havana core 0
#> 26 ENSG00000012048 41277338 havana core 0
#> 27 ENSG00000012048 41277500 ensembl core 0
#> 28 ENSG00000012048 41277500 ensembl core 0
#> 29 ENSG00000012048 41277468 ensembl core 0
#> 30 ENSG00000012048 41276132 ensembl core 0
#> 31 ENSG00000012048 41277468 ensembl core 0
#> id logic_name strand assembly_name species
#> 1 ENST00000357654 ensembl_havana_transcript -1 GRCh37 human
#> 2 ENST00000468300 ensembl_havana_transcript -1 GRCh37 human
#> 3 ENST00000586385 havana_homo_sapiens_37 -1 GRCh37 human
#> 4 ENST00000591534 havana_homo_sapiens_37 -1 GRCh37 human
#> 5 ENST00000591849 havana_homo_sapiens_37 -1 GRCh37 human
#> 6 ENST00000493795 ensembl_havana_transcript -1 GRCh37 human
#> 7 ENST00000471181 ensembl_havana_transcript -1 GRCh37 human
#> 8 ENST00000461221 havana_homo_sapiens_37 -1 GRCh37 human
#> 9 ENST00000491747 havana_homo_sapiens_37 -1 GRCh37 human
#> 10 ENST00000484087 havana_homo_sapiens_37 -1 GRCh37 human
#> 11 ENST00000478531 havana_homo_sapiens_37 -1 GRCh37 human
#> 12 ENST00000493919 havana_homo_sapiens_37 -1 GRCh37 human
#> 13 ENST00000472490 havana_homo_sapiens_37 -1 GRCh37 human
#> 14 ENST00000487825 havana_homo_sapiens_37 -1 GRCh37 human
#> 15 ENST00000461574 havana_homo_sapiens_37 -1 GRCh37 human
#> 16 ENST00000467274 havana_homo_sapiens_37 -1 GRCh37 human
#> 17 ENST00000412061 havana_homo_sapiens_37 -1 GRCh37 human
#> 18 ENST00000470026 havana_homo_sapiens_37 -1 GRCh37 human
#> 19 ENST00000477152 havana_homo_sapiens_37 -1 GRCh37 human
#> 20 ENST00000492859 havana_homo_sapiens_37 -1 GRCh37 human
#> 21 ENST00000497488 havana_homo_sapiens_37 -1 GRCh37 human
#> 22 ENST00000494123 havana_homo_sapiens_37 -1 GRCh37 human
#> 23 ENST00000473961 havana_homo_sapiens_37 -1 GRCh37 human
#> 24 ENST00000476777 havana_homo_sapiens_37 -1 GRCh37 human
#> 25 ENST00000461798 havana_homo_sapiens_37 -1 GRCh37 human
#> 26 ENST00000489037 havana_homo_sapiens_37 -1 GRCh37 human
#> 27 ENST00000354071 ensembl_homo_sapiens_37 -1 GRCh37 human
#> 28 ENST00000352993 ensembl_homo_sapiens_37 -1 GRCh37 human
#> 29 ENST00000346315 ensembl_homo_sapiens_37 -1 GRCh37 human
#> 30 ENST00000351666 ensembl_homo_sapiens_37 -1 GRCh37 human
#> 31 ENST00000309486 ensembl_homo_sapiens_37 -1 GRCh37 human
#> seq_region_name
#> 1 17
#> 2 17
#> 3 17
#> 4 17
#> 5 17
#> 6 17
#> 7 17
#> 8 17
#> 9 17
#> 10 17
#> 11 17
#> 12 17
#> 13 17
#> 14 17
#> 15 17
#> 16 17
#> 17 17
#> 18 17
#> 19 17
#> 20 17
#> 21 17
#> 22 17
#> 23 17
#> 24 17
#> 25 17
#> 26 17
#> 27 17
#> 28 17
#> 29 17
#> 30 17
#> 31 17
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $end
#> [1] 41277500
#>
#> $source
#> [1] "ensembl_havana"
#>
queryEnsemblByGene("ENSG00000139618")
#> $end
#> [1] 32973805
#>
#> $db_type
#> [1] "core"
#>
#> $description
#> [1] "breast cancer 2, early onset [Source:HGNC Symbol;Acc:1101]"
#>
#> $id
#> [1] "ENSG00000139618"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $Transcript
#> Parent db_type end source logic_name
#> 1 ENSG00000139618 core 32973347 ensembl_havana ensembl_havana_transcript
#> 2 ENSG00000139618 core 32907428 havana havana_homo_sapiens_37
#> 3 ENSG00000139618 core 32953632 havana havana_homo_sapiens_37
#> 4 ENSG00000139618 core 32972409 havana havana_homo_sapiens_37
#> 5 ENSG00000139618 core 32972585 havana havana_homo_sapiens_37
#> 6 ENSG00000139618 core 32973805 ensembl ensembl_homo_sapiens_37
#> id Exon species seq_region_name version
#> 1 ENST00000380152 c("GRCh3.... homo_sapiens 13 3
#> 2 ENST00000530893 c("GRCh3.... homo_sapiens 13 2
#> 3 ENST00000528762 c("homo_.... homo_sapiens 13 1
#> 4 ENST00000470094 c("13", .... homo_sapiens 13 1
#> 5 ENST00000533776 c(329711.... homo_sapiens 13 1
#> 6 ENST00000544455 c(1, 1, .... homo_sapiens 13 1
#> assembly_name biotype gencode_primary start object_type
#> 1 GRCh37 protein_coding 0 32889611 Transcript
#> 2 GRCh37 protein_coding 0 32889642 Transcript
#> 3 GRCh37 nonsense_mediated_decay 0 32945108 Transcript
#> 4 GRCh37 nonsense_mediated_decay 0 32953977 Transcript
#> 5 GRCh37 retained_intron 0 32970946 Transcript
#> 6 GRCh37 protein_coding 0 32889617 Transcript
#> strand display_name is_canonical length Translation.id
#> 1 1 BRCA2-001 0 10930 ENSP00000369497
#> 2 1 BRCA2-003 0 2011 ENSP00000435699
#> 3 1 BRCA2-005 0 495 ENSP00000433168
#> 4 1 BRCA2-002 0 842 ENSP00000434898
#> 5 1 BRCA2-006 0 523 <NA>
#> 6 1 BRCA2-201 1 10984 ENSP00000439902
#> Translation.object_type Translation.db_type Translation.Parent
#> 1 Translation core ENST00000380152
#> 2 Translation core ENST00000530893
#> 3 Translation core ENST00000528762
#> 4 Translation core ENST00000470094
#> 5 <NA> <NA> <NA>
#> 6 Translation core ENST00000544455
#> Translation.start Translation.end Translation.version Translation.length
#> 1 32890598 32972907 3 3418
#> 2 32899266 32907428 2 481
#> 3 32945108 32950807 1 64
#> 4 32953977 32970229 1 186
#> 5 NA NA NA NA
#> 6 32890598 32972907 1 3418
#> Translation.species
#> 1 homo_sapiens
#> 2 homo_sapiens
#> 3 homo_sapiens
#> 4 homo_sapiens
#> 5 <NA>
#> 6 homo_sapiens
#>
#> $species
#> [1] "homo_sapiens"
#>
#> $version
#> [1] 10
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $seq_region_name
#> [1] "13"
#>
#> $start
#> [1] 32889611
#>
#> $object_type
#> [1] "Gene"
#>
#> $strand
#> [1] 1
#>
#> $display_name
#> [1] "BRCA2"
#>
#> $canonical_transcript
#> [1] "ENST00000544455.1"
#>
event <- "SE_17_-_41251792_41249306_41249261_41246877_BRCA1"
queryEnsemblByEvent(event, species="human", assembly="hg19")
#> $end
#> [1] 41277500
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $version
#> [1] 15
#>
#> $start
#> [1] 41196312
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $db_type
#> [1] "core"
#>
#> $object_type
#> [1] "Gene"
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $strand
#> [1] -1
#>
#> $seq_region_name
#> [1] "17"
#>
#> $species
#> [1] "human"
#>
#> $Transcript
#> object_type db_type source Parent version display_name
#> 1 Transcript core ensembl_havana ENSG00000012048 3 BRCA1-001
#> 2 Transcript core ensembl_havana ENSG00000012048 1 BRCA1-007
#> 3 Transcript core havana ENSG00000012048 1 BRCA1-023
#> 4 Transcript core havana ENSG00000012048 1 BRCA1-024
#> 5 Transcript core havana ENSG00000012048 1 BRCA1-025
#> 6 Transcript core ensembl_havana ENSG00000012048 1 BRCA1-006
#> 7 Transcript core ensembl_havana ENSG00000012048 2 BRCA1-005
#> 8 Transcript core havana ENSG00000012048 1 BRCA1-010
#> 9 Transcript core havana ENSG00000012048 2 BRCA1-014
#> 10 Transcript core havana ENSG00000012048 1 BRCA1-015
#> 11 Transcript core havana ENSG00000012048 1 BRCA1-009
#> 12 Transcript core havana ENSG00000012048 1 BRCA1-008
#> 13 Transcript core havana ENSG00000012048 1 BRCA1-021
#> 14 Transcript core havana ENSG00000012048 1 BRCA1-019
#> 15 Transcript core havana ENSG00000012048 1 BRCA1-022
#> 16 Transcript core havana ENSG00000012048 1 BRCA1-012
#> 17 Transcript core havana ENSG00000012048 3 BRCA1-026
#> 18 Transcript core havana ENSG00000012048 1 BRCA1-011
#> 19 Transcript core havana ENSG00000012048 1 BRCA1-004
#> 20 Transcript core havana ENSG00000012048 1 BRCA1-002
#> 21 Transcript core havana ENSG00000012048 1 BRCA1-003
#> 22 Transcript core havana ENSG00000012048 1 BRCA1-013
#> 23 Transcript core havana ENSG00000012048 1 BRCA1-018
#> 24 Transcript core havana ENSG00000012048 1 BRCA1-017
#> 25 Transcript core havana ENSG00000012048 1 BRCA1-020
#> 26 Transcript core havana ENSG00000012048 1 BRCA1-016
#> 27 Transcript core ensembl ENSG00000012048 3 BRCA1-205
#> 28 Transcript core ensembl ENSG00000012048 3 BRCA1-204
#> 29 Transcript core ensembl ENSG00000012048 3 BRCA1-202
#> 30 Transcript core ensembl ENSG00000012048 3 BRCA1-203
#> 31 Transcript core ensembl ENSG00000012048 4 BRCA1-201
#> end length start assembly_name gencode_primary id
#> 1 41277387 7094 41196312 GRCh37 0 ENST00000357654
#> 2 41277468 3273 41196822 GRCh37 0 ENST00000468300
#> 3 41277346 781 41197580 GRCh37 0 ENST00000586385
#> 4 41277346 1282 41197580 GRCh37 0 ENST00000591534
#> 5 41277346 563 41197580 GRCh37 0 ENST00000591849
#> 6 41277419 5732 41197646 GRCh37 0 ENST00000493795
#> 7 41277500 5936 41197646 GRCh37 0 ENST00000471181
#> 8 41277305 5693 41197695 GRCh37 0 ENST00000461221
#> 9 41277373 2379 41197695 GRCh37 0 ENST00000491747
#> 10 41256933 1495 41215361 GRCh37 0 ENST00000484087
#> 11 41277376 1972 41215361 GRCh37 0 ENST00000478531
#> 12 41277419 1948 41215377 GRCh37 0 ENST00000493919
#> 13 41223083 561 41219291 GRCh37 0 ENST00000472490
#> 14 41256933 800 41228505 GRCh37 0 ENST00000487825
#> 15 41243841 726 41228554 GRCh37 0 ENST00000461574
#> 16 41277332 4497 41243115 GRCh37 0 ENST00000467274
#> 17 41247883 1312 41245587 GRCh37 0 ENST00000412061
#> 18 41277340 2108 41245601 GRCh37 0 ENST00000470026
#> 19 41277381 1980 41245603 GRCh37 0 ENST00000477152
#> 20 41277317 1584 41246129 GRCh37 0 ENST00000492859
#> 21 41277317 779 41246129 GRCh37 0 ENST00000497488
#> 22 41277467 1612 41246129 GRCh37 0 ENST00000494123
#> 23 41256908 958 41246187 GRCh37 0 ENST00000473961
#> 24 41277370 769 41247863 GRCh37 0 ENST00000476777
#> 25 41277387 582 41251848 GRCh37 0 ENST00000461798
#> 26 41277338 455 41256206 GRCh37 0 ENST00000489037
#> 27 41277500 6411 41196313 GRCh37 0 ENST00000354071
#> 28 41277500 3780 41196313 GRCh37 0 ENST00000352993
#> 29 41277468 6451 41196313 GRCh37 0 ENST00000346315
#> 30 41276132 3444 41196313 GRCh37 0 ENST00000351666
#> 31 41277468 7114 41196313 GRCh37 0 ENST00000309486
#> logic_name biotype strand
#> 1 ensembl_havana_transcript protein_coding -1
#> 2 ensembl_havana_transcript protein_coding -1
#> 3 havana_homo_sapiens_37 protein_coding -1
#> 4 havana_homo_sapiens_37 protein_coding -1
#> 5 havana_homo_sapiens_37 protein_coding -1
#> 6 ensembl_havana_transcript protein_coding -1
#> 7 ensembl_havana_transcript protein_coding -1
#> 8 havana_homo_sapiens_37 nonsense_mediated_decay -1
#> 9 havana_homo_sapiens_37 protein_coding -1
#> 10 havana_homo_sapiens_37 protein_coding -1
#> 11 havana_homo_sapiens_37 protein_coding -1
#> 12 havana_homo_sapiens_37 protein_coding -1
#> 13 havana_homo_sapiens_37 retained_intron -1
#> 14 havana_homo_sapiens_37 protein_coding -1
#> 15 havana_homo_sapiens_37 protein_coding -1
#> 16 havana_homo_sapiens_37 retained_intron -1
#> 17 havana_homo_sapiens_37 non_stop_decay -1
#> 18 havana_homo_sapiens_37 protein_coding -1
#> 19 havana_homo_sapiens_37 protein_coding -1
#> 20 havana_homo_sapiens_37 nonsense_mediated_decay -1
#> 21 havana_homo_sapiens_37 protein_coding -1
#> 22 havana_homo_sapiens_37 protein_coding -1
#> 23 havana_homo_sapiens_37 protein_coding -1
#> 24 havana_homo_sapiens_37 protein_coding -1
#> 25 havana_homo_sapiens_37 nonsense_mediated_decay -1
#> 26 havana_homo_sapiens_37 protein_coding -1
#> 27 ensembl_homo_sapiens_37 protein_coding -1
#> 28 ensembl_homo_sapiens_37 protein_coding -1
#> 29 ensembl_homo_sapiens_37 protein_coding -1
#> 30 ensembl_homo_sapiens_37 protein_coding -1
#> 31 ensembl_homo_sapiens_37 protein_coding -1
#> Translation.object_type Translation.db_type Translation.Parent
#> 1 Translation core ENST00000357654
#> 2 Translation core ENST00000468300
#> 3 Translation core ENST00000586385
#> 4 Translation core ENST00000591534
#> 5 Translation core ENST00000591849
#> 6 Translation core ENST00000493795
#> 7 Translation core ENST00000471181
#> 8 Translation core ENST00000461221
#> 9 Translation core ENST00000491747
#> 10 Translation core ENST00000484087
#> 11 Translation core ENST00000478531
#> 12 Translation core ENST00000493919
#> 13 <NA> <NA> <NA>
#> 14 Translation core ENST00000487825
#> 15 Translation core ENST00000461574
#> 16 <NA> <NA> <NA>
#> 17 Translation core ENST00000412061
#> 18 Translation core ENST00000470026
#> 19 Translation core ENST00000477152
#> 20 Translation core ENST00000492859
#> 21 Translation core ENST00000497488
#> 22 Translation core ENST00000494123
#> 23 Translation core ENST00000473961
#> 24 Translation core ENST00000476777
#> 25 Translation core ENST00000461798
#> 26 Translation core ENST00000489037
#> 27 Translation core ENST00000354071
#> 28 Translation core ENST00000352993
#> 29 Translation core ENST00000346315
#> 30 Translation core ENST00000351666
#> 31 Translation core ENST00000309486
#> Translation.id Translation.length Translation.end Translation.version
#> 1 ENSP00000350283 1863 41276113 3
#> 2 ENSP00000417148 699 41276113 1
#> 3 ENSP00000465818 173 41277202 1
#> 4 ENSP00000467329 354 41226495 1
#> 5 ENSP00000465347 96 41202109 1
#> 6 ENSP00000418775 1816 41258543 1
#> 7 ENSP00000418960 1884 41276113 2
#> 8 ENSP00000418548 63 41276113 1
#> 9 ENSP00000420705 759 41276113 2
#> 10 ENSP00000419481 498 41256933 1
#> 11 ENSP00000420412 623 41276113 1
#> 12 ENSP00000418819 572 41258543 1
#> 13 <NA> NA NA NA
#> 14 ENSP00000418212 266 41256933 1
#> 15 ENSP00000417241 242 41243841 1
#> 16 <NA> NA NA NA
#> 17 ENSP00000397145 437 41247883 3
#> 18 ENSP00000419274 649 41276113 1
#> 19 ENSP00000419988 622 41276113 1
#> 20 ENSP00000420253 59 41276113 1
#> 21 ENSP00000418986 177 41246659 1
#> 22 ENSP00000419103 473 41276113 1
#> 23 ENSP00000420201 319 41256908 1
#> 24 ENSP00000417554 222 41276113 1
#> 25 ENSP00000417988 63 41276113 1
#> 26 ENSP00000420781 98 41276113 1
#> 27 ENSP00000326002 1598 41276113 6
#> 28 ENSP00000312236 721 41276113 5
#> 29 ENSP00000246907 1624 41276113 4
#> 30 ENSP00000338007 680 41276113 3
#> 31 ENSP00000310938 1567 41246659 4
#> Translation.start Translation.species species seq_region_name is_canonical
#> 1 41197695 human human 17 0
#> 2 41197801 human human 17 0
#> 3 41197695 human human 17 0
#> 4 41197695 human human 17 0
#> 5 41197695 human human 17 0
#> 6 41197695 human human 17 0
#> 7 41197695 human human 17 1
#> 8 41256972 human human 17 0
#> 9 41197695 human human 17 0
#> 10 41215361 human human 17 0
#> 11 41215361 human human 17 0
#> 12 41215377 human human 17 0
#> 13 NA <NA> human 17 0
#> 14 41228505 human human 17 0
#> 15 41228554 human human 17 0
#> 16 NA <NA> human 17 0
#> 17 41245587 human human 17 0
#> 18 41245601 human human 17 0
#> 19 41245603 human human 17 0
#> 20 41262552 human human 17 0
#> 21 41246129 human human 17 0
#> 22 41246129 human human 17 0
#> 23 41246187 human human 17 0
#> 24 41247863 human human 17 0
#> 25 41256972 human human 17 0
#> 26 41256206 human human 17 0
#> 27 41197695 human human 17 0
#> 28 41197695 human human 17 0
#> 29 41197695 human human 17 0
#> 30 41197695 human human 17 0
#> 31 41197695 human human 17 0
#> Exon
#> 1 c(412773....
#> 2 c("ENSE0....
#> 3 c("Exon"....
#> 4 c(1, 1, ....
#> 5 c(1, 1, ....
#> 6 c(412772....
#> 7 c("core"....
#> 8 c("Exon"....
#> 9 c("human....
#> 10 c("ENSE0....
#> 11 c(412773....
#> 12 c("ENSE0....
#> 13 c(-1, -1....
#> 14 c("core"....
#> 15 c("17", ....
#> 16 c("GRCh3....
#> 17 c("17", ....
#> 18 c(-1, -1....
#> 19 c("Exon"....
#> 20 c("ENSE0....
#> 21 c(412773....
#> 22 c("Exon"....
#> 23 c("ENSE0....
#> 24 c(1, 1, ....
#> 25 c(412773....
#> 26 c("core"....
#> 27 c(-1, -1....
#> 28 c("ENSE0....
#> 29 c(412774....
#> 30 c(1, 1, ....
#> 31 c("ENSE0....
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $id
#> [1] "ENSG00000012048"
#>