Query information from Ensembl
Usage
queryEnsemblByGene(gene, species = NULL, assembly = NULL)
queryEnsemblByEvent(event, species = NULL, assembly = NULL, data = NULL)See also
Other functions to retrieve external information:
ensemblToUniprot(),
plotProtein(),
plotTranscripts()
Examples
queryEnsemblByGene("BRCA1", "human", "hg19")
#> $version
#> [1] 15
#>
#> $start
#> [1] 41196312
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $strand
#> [1] -1
#>
#> $object_type
#> [1] "Gene"
#>
#> $end
#> [1] 41277500
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $species
#> [1] "human"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $db_type
#> [1] "core"
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $seq_region_name
#> [1] "17"
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $Transcript
#> species gencode_primary assembly_name logic_name db_type
#> 1 human 0 GRCh37 ensembl_havana_transcript core
#> 2 human 0 GRCh37 ensembl_havana_transcript core
#> 3 human 0 GRCh37 havana_homo_sapiens_37 core
#> 4 human 0 GRCh37 havana_homo_sapiens_37 core
#> 5 human 0 GRCh37 havana_homo_sapiens_37 core
#> 6 human 0 GRCh37 ensembl_havana_transcript core
#> 7 human 0 GRCh37 ensembl_havana_transcript core
#> 8 human 0 GRCh37 havana_homo_sapiens_37 core
#> 9 human 0 GRCh37 havana_homo_sapiens_37 core
#> 10 human 0 GRCh37 havana_homo_sapiens_37 core
#> 11 human 0 GRCh37 havana_homo_sapiens_37 core
#> 12 human 0 GRCh37 havana_homo_sapiens_37 core
#> 13 human 0 GRCh37 havana_homo_sapiens_37 core
#> 14 human 0 GRCh37 havana_homo_sapiens_37 core
#> 15 human 0 GRCh37 havana_homo_sapiens_37 core
#> 16 human 0 GRCh37 havana_homo_sapiens_37 core
#> 17 human 0 GRCh37 havana_homo_sapiens_37 core
#> 18 human 0 GRCh37 havana_homo_sapiens_37 core
#> 19 human 0 GRCh37 havana_homo_sapiens_37 core
#> 20 human 0 GRCh37 havana_homo_sapiens_37 core
#> 21 human 0 GRCh37 havana_homo_sapiens_37 core
#> 22 human 0 GRCh37 havana_homo_sapiens_37 core
#> 23 human 0 GRCh37 havana_homo_sapiens_37 core
#> 24 human 0 GRCh37 havana_homo_sapiens_37 core
#> 25 human 0 GRCh37 havana_homo_sapiens_37 core
#> 26 human 0 GRCh37 havana_homo_sapiens_37 core
#> 27 human 0 GRCh37 ensembl_homo_sapiens_37 core
#> 28 human 0 GRCh37 ensembl_homo_sapiens_37 core
#> 29 human 0 GRCh37 ensembl_homo_sapiens_37 core
#> 30 human 0 GRCh37 ensembl_homo_sapiens_37 core
#> 31 human 0 GRCh37 ensembl_homo_sapiens_37 core
#> display_name seq_region_name id biotype
#> 1 BRCA1-001 17 ENST00000357654 protein_coding
#> 2 BRCA1-007 17 ENST00000468300 protein_coding
#> 3 BRCA1-023 17 ENST00000586385 protein_coding
#> 4 BRCA1-024 17 ENST00000591534 protein_coding
#> 5 BRCA1-025 17 ENST00000591849 protein_coding
#> 6 BRCA1-006 17 ENST00000493795 protein_coding
#> 7 BRCA1-005 17 ENST00000471181 protein_coding
#> 8 BRCA1-010 17 ENST00000461221 nonsense_mediated_decay
#> 9 BRCA1-014 17 ENST00000491747 protein_coding
#> 10 BRCA1-015 17 ENST00000484087 protein_coding
#> 11 BRCA1-009 17 ENST00000478531 protein_coding
#> 12 BRCA1-008 17 ENST00000493919 protein_coding
#> 13 BRCA1-021 17 ENST00000472490 retained_intron
#> 14 BRCA1-019 17 ENST00000487825 protein_coding
#> 15 BRCA1-022 17 ENST00000461574 protein_coding
#> 16 BRCA1-012 17 ENST00000467274 retained_intron
#> 17 BRCA1-026 17 ENST00000412061 non_stop_decay
#> 18 BRCA1-011 17 ENST00000470026 protein_coding
#> 19 BRCA1-004 17 ENST00000477152 protein_coding
#> 20 BRCA1-002 17 ENST00000492859 nonsense_mediated_decay
#> 21 BRCA1-003 17 ENST00000497488 protein_coding
#> 22 BRCA1-013 17 ENST00000494123 protein_coding
#> 23 BRCA1-018 17 ENST00000473961 protein_coding
#> 24 BRCA1-017 17 ENST00000476777 protein_coding
#> 25 BRCA1-020 17 ENST00000461798 nonsense_mediated_decay
#> 26 BRCA1-016 17 ENST00000489037 protein_coding
#> 27 BRCA1-205 17 ENST00000354071 protein_coding
#> 28 BRCA1-204 17 ENST00000352993 protein_coding
#> 29 BRCA1-202 17 ENST00000346315 protein_coding
#> 30 BRCA1-203 17 ENST00000351666 protein_coding
#> 31 BRCA1-201 17 ENST00000309486 protein_coding
#> start version is_canonical strand object_type Exon end
#> 1 41196312 3 0 -1 Transcript c("17", .... 41277387
#> 2 41196822 1 0 -1 Transcript c("ENSE0.... 41277468
#> 3 41197580 1 0 -1 Transcript c("GRCh3.... 41277346
#> 4 41197580 1 0 -1 Transcript c("Exon".... 41277346
#> 5 41197580 1 0 -1 Transcript c("ENSE0.... 41277346
#> 6 41197646 1 0 -1 Transcript c("ENSE0.... 41277419
#> 7 41197646 2 1 -1 Transcript c(412775.... 41277500
#> 8 41197695 1 0 -1 Transcript c(-1, -1.... 41277305
#> 9 41197695 2 0 -1 Transcript c(-1, -1.... 41277373
#> 10 41215361 1 0 -1 Transcript c("core".... 41256933
#> 11 41215361 1 0 -1 Transcript c(412773.... 41277376
#> 12 41215377 1 0 -1 Transcript c("ENSE0.... 41277419
#> 13 41219291 1 0 -1 Transcript c("core".... 41223083
#> 14 41228505 1 0 -1 Transcript c("17", .... 41256933
#> 15 41228554 1 0 -1 Transcript c(-1, -1.... 41243841
#> 16 41243115 1 0 -1 Transcript c("GRCh3.... 41277332
#> 17 41245587 3 0 -1 Transcript c("ENSE0.... 41247883
#> 18 41245601 1 0 -1 Transcript c(-1, -1.... 41277340
#> 19 41245603 1 0 -1 Transcript c("17", .... 41277381
#> 20 41246129 1 0 -1 Transcript c(-1, -1.... 41277317
#> 21 41246129 1 0 -1 Transcript c("human.... 41277317
#> 22 41246129 1 0 -1 Transcript c(412774.... 41277467
#> 23 41246187 1 0 -1 Transcript c("17", .... 41256908
#> 24 41247863 1 0 -1 Transcript c("ENSE0.... 41277370
#> 25 41251848 1 0 -1 Transcript c("ENSE0.... 41277387
#> 26 41256206 1 0 -1 Transcript c("ENSE0.... 41277338
#> 27 41196313 3 0 -1 Transcript c(412775.... 41277500
#> 28 41196313 3 0 -1 Transcript c(412772.... 41277500
#> 29 41196313 3 0 -1 Transcript c("GRCh3.... 41277468
#> 30 41196313 3 0 -1 Transcript c("17", .... 41276132
#> 31 41196313 4 0 -1 Transcript c("17", .... 41277468
#> length Parent Translation.id Translation.db_type
#> 1 7094 ENSG00000012048 ENSP00000350283 core
#> 2 3273 ENSG00000012048 ENSP00000417148 core
#> 3 781 ENSG00000012048 ENSP00000465818 core
#> 4 1282 ENSG00000012048 ENSP00000467329 core
#> 5 563 ENSG00000012048 ENSP00000465347 core
#> 6 5732 ENSG00000012048 ENSP00000418775 core
#> 7 5936 ENSG00000012048 ENSP00000418960 core
#> 8 5693 ENSG00000012048 ENSP00000418548 core
#> 9 2379 ENSG00000012048 ENSP00000420705 core
#> 10 1495 ENSG00000012048 ENSP00000419481 core
#> 11 1972 ENSG00000012048 ENSP00000420412 core
#> 12 1948 ENSG00000012048 ENSP00000418819 core
#> 13 561 ENSG00000012048 <NA> <NA>
#> 14 800 ENSG00000012048 ENSP00000418212 core
#> 15 726 ENSG00000012048 ENSP00000417241 core
#> 16 4497 ENSG00000012048 <NA> <NA>
#> 17 1312 ENSG00000012048 ENSP00000397145 core
#> 18 2108 ENSG00000012048 ENSP00000419274 core
#> 19 1980 ENSG00000012048 ENSP00000419988 core
#> 20 1584 ENSG00000012048 ENSP00000420253 core
#> 21 779 ENSG00000012048 ENSP00000418986 core
#> 22 1612 ENSG00000012048 ENSP00000419103 core
#> 23 958 ENSG00000012048 ENSP00000420201 core
#> 24 769 ENSG00000012048 ENSP00000417554 core
#> 25 582 ENSG00000012048 ENSP00000417988 core
#> 26 455 ENSG00000012048 ENSP00000420781 core
#> 27 6411 ENSG00000012048 ENSP00000326002 core
#> 28 3780 ENSG00000012048 ENSP00000312236 core
#> 29 6451 ENSG00000012048 ENSP00000246907 core
#> 30 3444 ENSG00000012048 ENSP00000338007 core
#> 31 7114 ENSG00000012048 ENSP00000310938 core
#> Translation.Parent Translation.length Translation.end
#> 1 ENST00000357654 1863 41276113
#> 2 ENST00000468300 699 41276113
#> 3 ENST00000586385 173 41277202
#> 4 ENST00000591534 354 41226495
#> 5 ENST00000591849 96 41202109
#> 6 ENST00000493795 1816 41258543
#> 7 ENST00000471181 1884 41276113
#> 8 ENST00000461221 63 41276113
#> 9 ENST00000491747 759 41276113
#> 10 ENST00000484087 498 41256933
#> 11 ENST00000478531 623 41276113
#> 12 ENST00000493919 572 41258543
#> 13 <NA> NA NA
#> 14 ENST00000487825 266 41256933
#> 15 ENST00000461574 242 41243841
#> 16 <NA> NA NA
#> 17 ENST00000412061 437 41247883
#> 18 ENST00000470026 649 41276113
#> 19 ENST00000477152 622 41276113
#> 20 ENST00000492859 59 41276113
#> 21 ENST00000497488 177 41246659
#> 22 ENST00000494123 473 41276113
#> 23 ENST00000473961 319 41256908
#> 24 ENST00000476777 222 41276113
#> 25 ENST00000461798 63 41276113
#> 26 ENST00000489037 98 41276113
#> 27 ENST00000354071 1598 41276113
#> 28 ENST00000352993 721 41276113
#> 29 ENST00000346315 1624 41276113
#> 30 ENST00000351666 680 41276113
#> 31 ENST00000309486 1567 41246659
#> Translation.object_type Translation.species Translation.start
#> 1 Translation human 41197695
#> 2 Translation human 41197801
#> 3 Translation human 41197695
#> 4 Translation human 41197695
#> 5 Translation human 41197695
#> 6 Translation human 41197695
#> 7 Translation human 41197695
#> 8 Translation human 41256972
#> 9 Translation human 41197695
#> 10 Translation human 41215361
#> 11 Translation human 41215361
#> 12 Translation human 41215377
#> 13 <NA> <NA> NA
#> 14 Translation human 41228505
#> 15 Translation human 41228554
#> 16 <NA> <NA> NA
#> 17 Translation human 41245587
#> 18 Translation human 41245601
#> 19 Translation human 41245603
#> 20 Translation human 41262552
#> 21 Translation human 41246129
#> 22 Translation human 41246129
#> 23 Translation human 41246187
#> 24 Translation human 41247863
#> 25 Translation human 41256972
#> 26 Translation human 41256206
#> 27 Translation human 41197695
#> 28 Translation human 41197695
#> 29 Translation human 41197695
#> 30 Translation human 41197695
#> 31 Translation human 41197695
#> Translation.version source
#> 1 3 ensembl_havana
#> 2 1 ensembl_havana
#> 3 1 havana
#> 4 1 havana
#> 5 1 havana
#> 6 1 ensembl_havana
#> 7 2 ensembl_havana
#> 8 1 havana
#> 9 2 havana
#> 10 1 havana
#> 11 1 havana
#> 12 1 havana
#> 13 NA havana
#> 14 1 havana
#> 15 1 havana
#> 16 NA havana
#> 17 3 havana
#> 18 1 havana
#> 19 1 havana
#> 20 1 havana
#> 21 1 havana
#> 22 1 havana
#> 23 1 havana
#> 24 1 havana
#> 25 1 havana
#> 26 1 havana
#> 27 6 ensembl
#> 28 5 ensembl
#> 29 4 ensembl
#> 30 3 ensembl
#> 31 4 ensembl
#>
queryEnsemblByGene("ENSG00000139618")
#> $species
#> [1] "homo_sapiens"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $display_name
#> [1] "BRCA2"
#>
#> $seq_region_name
#> [1] "13"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $db_type
#> [1] "core"
#>
#> $Transcript
#> is_canonical version start object_type strand Exon end length
#> 1 0 3 32889611 Transcript 1 c("13", .... 32973347 10930
#> 2 0 2 32889642 Transcript 1 c("ENSE0.... 32907428 2011
#> 3 0 1 32945108 Transcript 1 c("ENSE0.... 32953632 495
#> 4 0 1 32953977 Transcript 1 c("ENSE0.... 32972409 842
#> 5 0 1 32970946 Transcript 1 c("GRCh3.... 32972585 523
#> 6 1 1 32889617 Transcript 1 c("ENSE0.... 32973805 10984
#> Parent Translation.Parent Translation.db_type Translation.id
#> 1 ENSG00000139618 ENST00000380152 core ENSP00000369497
#> 2 ENSG00000139618 ENST00000530893 core ENSP00000435699
#> 3 ENSG00000139618 ENST00000528762 core ENSP00000433168
#> 4 ENSG00000139618 ENST00000470094 core ENSP00000434898
#> 5 ENSG00000139618 <NA> <NA> <NA>
#> 6 ENSG00000139618 ENST00000544455 core ENSP00000439902
#> Translation.object_type Translation.version Translation.start
#> 1 Translation 3 32890598
#> 2 Translation 2 32899266
#> 3 Translation 1 32945108
#> 4 Translation 1 32953977
#> 5 <NA> NA NA
#> 6 Translation 1 32890598
#> Translation.species Translation.length Translation.end source
#> 1 homo_sapiens 3418 32972907 ensembl_havana
#> 2 homo_sapiens 481 32907428 havana
#> 3 homo_sapiens 64 32950807 havana
#> 4 homo_sapiens 186 32970229 havana
#> 5 <NA> NA NA havana
#> 6 homo_sapiens 3418 32972907 ensembl
#> gencode_primary species assembly_name db_type logic_name
#> 1 0 homo_sapiens GRCh37 core ensembl_havana_transcript
#> 2 0 homo_sapiens GRCh37 core havana_homo_sapiens_37
#> 3 0 homo_sapiens GRCh37 core havana_homo_sapiens_37
#> 4 0 homo_sapiens GRCh37 core havana_homo_sapiens_37
#> 5 0 homo_sapiens GRCh37 core havana_homo_sapiens_37
#> 6 0 homo_sapiens GRCh37 core ensembl_homo_sapiens_37
#> seq_region_name display_name biotype id
#> 1 13 BRCA2-001 protein_coding ENST00000380152
#> 2 13 BRCA2-003 protein_coding ENST00000530893
#> 3 13 BRCA2-005 nonsense_mediated_decay ENST00000528762
#> 4 13 BRCA2-002 nonsense_mediated_decay ENST00000470094
#> 5 13 BRCA2-006 retained_intron ENST00000533776
#> 6 13 BRCA2-201 protein_coding ENST00000544455
#>
#> $id
#> [1] "ENSG00000139618"
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $strand
#> [1] 1
#>
#> $object_type
#> [1] "Gene"
#>
#> $canonical_transcript
#> [1] "ENST00000544455.1"
#>
#> $version
#> [1] 10
#>
#> $start
#> [1] 32889611
#>
#> $end
#> [1] 32973805
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $description
#> [1] "breast cancer 2, early onset [Source:HGNC Symbol;Acc:1101]"
#>
event <- "SE_17_-_41251792_41249306_41249261_41246877_BRCA1"
queryEnsemblByEvent(event, species="human", assembly="hg19")
#> $species
#> [1] "human"
#>
#> $version
#> [1] 15
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $end
#> [1] 41277500
#>
#> $Transcript
#> gencode_primary Exon strand Parent start seq_region_name
#> 1 0 c("ENSE0.... -1 ENSG00000012048 41196312 17
#> 2 0 c(1, 1, .... -1 ENSG00000012048 41196822 17
#> 3 0 c("Exon".... -1 ENSG00000012048 41197580 17
#> 4 0 c("17", .... -1 ENSG00000012048 41197580 17
#> 5 0 c("Exon".... -1 ENSG00000012048 41197580 17
#> 6 0 c("human.... -1 ENSG00000012048 41197646 17
#> 7 0 c("human.... -1 ENSG00000012048 41197646 17
#> 8 0 c("ENSE0.... -1 ENSG00000012048 41197695 17
#> 9 0 c("17", .... -1 ENSG00000012048 41197695 17
#> 10 0 c(412569.... -1 ENSG00000012048 41215361 17
#> 11 0 c(-1, -1.... -1 ENSG00000012048 41215361 17
#> 12 0 c("ENSE0.... -1 ENSG00000012048 41215377 17
#> 13 0 c(1, 1),.... -1 ENSG00000012048 41219291 17
#> 14 0 c("Exon".... -1 ENSG00000012048 41228505 17
#> 15 0 c("17", .... -1 ENSG00000012048 41228554 17
#> 16 0 c("ENSE0.... -1 ENSG00000012048 41243115 17
#> 17 0 c("17", .... -1 ENSG00000012048 41245587 17
#> 18 0 c("human.... -1 ENSG00000012048 41245601 17
#> 19 0 c("human.... -1 ENSG00000012048 41245603 17
#> 20 0 c("ENSE0.... -1 ENSG00000012048 41246129 17
#> 21 0 c("human.... -1 ENSG00000012048 41246129 17
#> 22 0 c("ENSE0.... -1 ENSG00000012048 41246129 17
#> 23 0 c("human.... -1 ENSG00000012048 41246187 17
#> 24 0 c("human.... -1 ENSG00000012048 41247863 17
#> 25 0 c("Exon".... -1 ENSG00000012048 41251848 17
#> 26 0 c("17", .... -1 ENSG00000012048 41256206 17
#> 27 0 c("ENSE0.... -1 ENSG00000012048 41196313 17
#> 28 0 c(-1, -1.... -1 ENSG00000012048 41196313 17
#> 29 0 c("core".... -1 ENSG00000012048 41196313 17
#> 30 0 c(412760.... -1 ENSG00000012048 41196313 17
#> 31 0 c("ENSE0.... -1 ENSG00000012048 41196313 17
#> length biotype source db_type Translation.version
#> 1 7094 protein_coding ensembl_havana core 3
#> 2 3273 protein_coding ensembl_havana core 1
#> 3 781 protein_coding havana core 1
#> 4 1282 protein_coding havana core 1
#> 5 563 protein_coding havana core 1
#> 6 5732 protein_coding ensembl_havana core 1
#> 7 5936 protein_coding ensembl_havana core 2
#> 8 5693 nonsense_mediated_decay havana core 1
#> 9 2379 protein_coding havana core 2
#> 10 1495 protein_coding havana core 1
#> 11 1972 protein_coding havana core 1
#> 12 1948 protein_coding havana core 1
#> 13 561 retained_intron havana core NA
#> 14 800 protein_coding havana core 1
#> 15 726 protein_coding havana core 1
#> 16 4497 retained_intron havana core NA
#> 17 1312 non_stop_decay havana core 3
#> 18 2108 protein_coding havana core 1
#> 19 1980 protein_coding havana core 1
#> 20 1584 nonsense_mediated_decay havana core 1
#> 21 779 protein_coding havana core 1
#> 22 1612 protein_coding havana core 1
#> 23 958 protein_coding havana core 1
#> 24 769 protein_coding havana core 1
#> 25 582 nonsense_mediated_decay havana core 1
#> 26 455 protein_coding havana core 1
#> 27 6411 protein_coding ensembl core 6
#> 28 3780 protein_coding ensembl core 5
#> 29 6451 protein_coding ensembl core 4
#> 30 3444 protein_coding ensembl core 3
#> 31 7114 protein_coding ensembl core 4
#> Translation.db_type Translation.end Translation.length Translation.species
#> 1 core 41276113 1863 human
#> 2 core 41276113 699 human
#> 3 core 41277202 173 human
#> 4 core 41226495 354 human
#> 5 core 41202109 96 human
#> 6 core 41258543 1816 human
#> 7 core 41276113 1884 human
#> 8 core 41276113 63 human
#> 9 core 41276113 759 human
#> 10 core 41256933 498 human
#> 11 core 41276113 623 human
#> 12 core 41258543 572 human
#> 13 <NA> NA NA <NA>
#> 14 core 41256933 266 human
#> 15 core 41243841 242 human
#> 16 <NA> NA NA <NA>
#> 17 core 41247883 437 human
#> 18 core 41276113 649 human
#> 19 core 41276113 622 human
#> 20 core 41276113 59 human
#> 21 core 41246659 177 human
#> 22 core 41276113 473 human
#> 23 core 41256908 319 human
#> 24 core 41276113 222 human
#> 25 core 41276113 63 human
#> 26 core 41276113 98 human
#> 27 core 41276113 1598 human
#> 28 core 41276113 721 human
#> 29 core 41276113 1624 human
#> 30 core 41276113 680 human
#> 31 core 41246659 1567 human
#> Translation.start Translation.Parent Translation.object_type Translation.id
#> 1 41197695 ENST00000357654 Translation ENSP00000350283
#> 2 41197801 ENST00000468300 Translation ENSP00000417148
#> 3 41197695 ENST00000586385 Translation ENSP00000465818
#> 4 41197695 ENST00000591534 Translation ENSP00000467329
#> 5 41197695 ENST00000591849 Translation ENSP00000465347
#> 6 41197695 ENST00000493795 Translation ENSP00000418775
#> 7 41197695 ENST00000471181 Translation ENSP00000418960
#> 8 41256972 ENST00000461221 Translation ENSP00000418548
#> 9 41197695 ENST00000491747 Translation ENSP00000420705
#> 10 41215361 ENST00000484087 Translation ENSP00000419481
#> 11 41215361 ENST00000478531 Translation ENSP00000420412
#> 12 41215377 ENST00000493919 Translation ENSP00000418819
#> 13 NA <NA> <NA> <NA>
#> 14 41228505 ENST00000487825 Translation ENSP00000418212
#> 15 41228554 ENST00000461574 Translation ENSP00000417241
#> 16 NA <NA> <NA> <NA>
#> 17 41245587 ENST00000412061 Translation ENSP00000397145
#> 18 41245601 ENST00000470026 Translation ENSP00000419274
#> 19 41245603 ENST00000477152 Translation ENSP00000419988
#> 20 41262552 ENST00000492859 Translation ENSP00000420253
#> 21 41246129 ENST00000497488 Translation ENSP00000418986
#> 22 41246129 ENST00000494123 Translation ENSP00000419103
#> 23 41246187 ENST00000473961 Translation ENSP00000420201
#> 24 41247863 ENST00000476777 Translation ENSP00000417554
#> 25 41256972 ENST00000461798 Translation ENSP00000417988
#> 26 41256206 ENST00000489037 Translation ENSP00000420781
#> 27 41197695 ENST00000354071 Translation ENSP00000326002
#> 28 41197695 ENST00000352993 Translation ENSP00000312236
#> 29 41197695 ENST00000346315 Translation ENSP00000246907
#> 30 41197695 ENST00000351666 Translation ENSP00000338007
#> 31 41197695 ENST00000309486 Translation ENSP00000310938
#> object_type display_name logic_name id version
#> 1 Transcript BRCA1-001 ensembl_havana_transcript ENST00000357654 3
#> 2 Transcript BRCA1-007 ensembl_havana_transcript ENST00000468300 1
#> 3 Transcript BRCA1-023 havana_homo_sapiens_37 ENST00000586385 1
#> 4 Transcript BRCA1-024 havana_homo_sapiens_37 ENST00000591534 1
#> 5 Transcript BRCA1-025 havana_homo_sapiens_37 ENST00000591849 1
#> 6 Transcript BRCA1-006 ensembl_havana_transcript ENST00000493795 1
#> 7 Transcript BRCA1-005 ensembl_havana_transcript ENST00000471181 2
#> 8 Transcript BRCA1-010 havana_homo_sapiens_37 ENST00000461221 1
#> 9 Transcript BRCA1-014 havana_homo_sapiens_37 ENST00000491747 2
#> 10 Transcript BRCA1-015 havana_homo_sapiens_37 ENST00000484087 1
#> 11 Transcript BRCA1-009 havana_homo_sapiens_37 ENST00000478531 1
#> 12 Transcript BRCA1-008 havana_homo_sapiens_37 ENST00000493919 1
#> 13 Transcript BRCA1-021 havana_homo_sapiens_37 ENST00000472490 1
#> 14 Transcript BRCA1-019 havana_homo_sapiens_37 ENST00000487825 1
#> 15 Transcript BRCA1-022 havana_homo_sapiens_37 ENST00000461574 1
#> 16 Transcript BRCA1-012 havana_homo_sapiens_37 ENST00000467274 1
#> 17 Transcript BRCA1-026 havana_homo_sapiens_37 ENST00000412061 3
#> 18 Transcript BRCA1-011 havana_homo_sapiens_37 ENST00000470026 1
#> 19 Transcript BRCA1-004 havana_homo_sapiens_37 ENST00000477152 1
#> 20 Transcript BRCA1-002 havana_homo_sapiens_37 ENST00000492859 1
#> 21 Transcript BRCA1-003 havana_homo_sapiens_37 ENST00000497488 1
#> 22 Transcript BRCA1-013 havana_homo_sapiens_37 ENST00000494123 1
#> 23 Transcript BRCA1-018 havana_homo_sapiens_37 ENST00000473961 1
#> 24 Transcript BRCA1-017 havana_homo_sapiens_37 ENST00000476777 1
#> 25 Transcript BRCA1-020 havana_homo_sapiens_37 ENST00000461798 1
#> 26 Transcript BRCA1-016 havana_homo_sapiens_37 ENST00000489037 1
#> 27 Transcript BRCA1-205 ensembl_homo_sapiens_37 ENST00000354071 3
#> 28 Transcript BRCA1-204 ensembl_homo_sapiens_37 ENST00000352993 3
#> 29 Transcript BRCA1-202 ensembl_homo_sapiens_37 ENST00000346315 3
#> 30 Transcript BRCA1-203 ensembl_homo_sapiens_37 ENST00000351666 3
#> 31 Transcript BRCA1-201 ensembl_homo_sapiens_37 ENST00000309486 4
#> assembly_name end species is_canonical
#> 1 GRCh37 41277387 human 0
#> 2 GRCh37 41277468 human 0
#> 3 GRCh37 41277346 human 0
#> 4 GRCh37 41277346 human 0
#> 5 GRCh37 41277346 human 0
#> 6 GRCh37 41277419 human 0
#> 7 GRCh37 41277500 human 1
#> 8 GRCh37 41277305 human 0
#> 9 GRCh37 41277373 human 0
#> 10 GRCh37 41256933 human 0
#> 11 GRCh37 41277376 human 0
#> 12 GRCh37 41277419 human 0
#> 13 GRCh37 41223083 human 0
#> 14 GRCh37 41256933 human 0
#> 15 GRCh37 41243841 human 0
#> 16 GRCh37 41277332 human 0
#> 17 GRCh37 41247883 human 0
#> 18 GRCh37 41277340 human 0
#> 19 GRCh37 41277381 human 0
#> 20 GRCh37 41277317 human 0
#> 21 GRCh37 41277317 human 0
#> 22 GRCh37 41277467 human 0
#> 23 GRCh37 41256908 human 0
#> 24 GRCh37 41277370 human 0
#> 25 GRCh37 41277387 human 0
#> 26 GRCh37 41277338 human 0
#> 27 GRCh37 41277500 human 0
#> 28 GRCh37 41277500 human 0
#> 29 GRCh37 41277468 human 0
#> 30 GRCh37 41276132 human 0
#> 31 GRCh37 41277468 human 0
#>
#> $object_type
#> [1] "Gene"
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $db_type
#> [1] "core"
#>
#> $strand
#> [1] -1
#>
#> $start
#> [1] 41196312
#>
#> $seq_region_name
#> [1] "17"
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>