Query information from Ensembl
Usage
queryEnsemblByGene(gene, species = NULL, assembly = NULL)
queryEnsemblByEvent(event, species = NULL, assembly = NULL, data = NULL)See also
Other functions to retrieve external information:
ensemblToUniprot(),
plotProtein(),
plotTranscripts()
Examples
queryEnsemblByGene("BRCA1", "human", "hg19")
#> $seq_region_name
#> [1] "17"
#>
#> $Transcript
#> source db_type object_type Parent end length
#> 1 ensembl_havana core Transcript ENSG00000012048 41277387 7094
#> 2 ensembl_havana core Transcript ENSG00000012048 41277468 3273
#> 3 havana core Transcript ENSG00000012048 41277346 781
#> 4 havana core Transcript ENSG00000012048 41277346 1282
#> 5 havana core Transcript ENSG00000012048 41277346 563
#> 6 ensembl_havana core Transcript ENSG00000012048 41277419 5732
#> 7 ensembl_havana core Transcript ENSG00000012048 41277500 5936
#> 8 havana core Transcript ENSG00000012048 41277305 5693
#> 9 havana core Transcript ENSG00000012048 41277373 2379
#> 10 havana core Transcript ENSG00000012048 41256933 1495
#> 11 havana core Transcript ENSG00000012048 41277376 1972
#> 12 havana core Transcript ENSG00000012048 41277419 1948
#> 13 havana core Transcript ENSG00000012048 41223083 561
#> 14 havana core Transcript ENSG00000012048 41256933 800
#> 15 havana core Transcript ENSG00000012048 41243841 726
#> 16 havana core Transcript ENSG00000012048 41277332 4497
#> 17 havana core Transcript ENSG00000012048 41247883 1312
#> 18 havana core Transcript ENSG00000012048 41277340 2108
#> 19 havana core Transcript ENSG00000012048 41277381 1980
#> 20 havana core Transcript ENSG00000012048 41277317 1584
#> 21 havana core Transcript ENSG00000012048 41277317 779
#> 22 havana core Transcript ENSG00000012048 41277467 1612
#> 23 havana core Transcript ENSG00000012048 41256908 958
#> 24 havana core Transcript ENSG00000012048 41277370 769
#> 25 havana core Transcript ENSG00000012048 41277387 582
#> 26 havana core Transcript ENSG00000012048 41277338 455
#> 27 ensembl core Transcript ENSG00000012048 41277500 6411
#> 28 ensembl core Transcript ENSG00000012048 41277500 3780
#> 29 ensembl core Transcript ENSG00000012048 41277468 6451
#> 30 ensembl core Transcript ENSG00000012048 41276132 3444
#> 31 ensembl core Transcript ENSG00000012048 41277468 7114
#> display_name version start assembly_name gencode_primary
#> 1 BRCA1-001 3 41196312 GRCh37 0
#> 2 BRCA1-007 1 41196822 GRCh37 0
#> 3 BRCA1-023 1 41197580 GRCh37 0
#> 4 BRCA1-024 1 41197580 GRCh37 0
#> 5 BRCA1-025 1 41197580 GRCh37 0
#> 6 BRCA1-006 1 41197646 GRCh37 0
#> 7 BRCA1-005 2 41197646 GRCh37 0
#> 8 BRCA1-010 1 41197695 GRCh37 0
#> 9 BRCA1-014 2 41197695 GRCh37 0
#> 10 BRCA1-015 1 41215361 GRCh37 0
#> 11 BRCA1-009 1 41215361 GRCh37 0
#> 12 BRCA1-008 1 41215377 GRCh37 0
#> 13 BRCA1-021 1 41219291 GRCh37 0
#> 14 BRCA1-019 1 41228505 GRCh37 0
#> 15 BRCA1-022 1 41228554 GRCh37 0
#> 16 BRCA1-012 1 41243115 GRCh37 0
#> 17 BRCA1-026 3 41245587 GRCh37 0
#> 18 BRCA1-011 1 41245601 GRCh37 0
#> 19 BRCA1-004 1 41245603 GRCh37 0
#> 20 BRCA1-002 1 41246129 GRCh37 0
#> 21 BRCA1-003 1 41246129 GRCh37 0
#> 22 BRCA1-013 1 41246129 GRCh37 0
#> 23 BRCA1-018 1 41246187 GRCh37 0
#> 24 BRCA1-017 1 41247863 GRCh37 0
#> 25 BRCA1-020 1 41251848 GRCh37 0
#> 26 BRCA1-016 1 41256206 GRCh37 0
#> 27 BRCA1-205 3 41196313 GRCh37 0
#> 28 BRCA1-204 3 41196313 GRCh37 0
#> 29 BRCA1-202 3 41196313 GRCh37 0
#> 30 BRCA1-203 3 41196313 GRCh37 0
#> 31 BRCA1-201 4 41196313 GRCh37 0
#> biotype logic_name id
#> 1 protein_coding ensembl_havana_transcript ENST00000357654
#> 2 protein_coding ensembl_havana_transcript ENST00000468300
#> 3 protein_coding havana_homo_sapiens_37 ENST00000586385
#> 4 protein_coding havana_homo_sapiens_37 ENST00000591534
#> 5 protein_coding havana_homo_sapiens_37 ENST00000591849
#> 6 protein_coding ensembl_havana_transcript ENST00000493795
#> 7 protein_coding ensembl_havana_transcript ENST00000471181
#> 8 nonsense_mediated_decay havana_homo_sapiens_37 ENST00000461221
#> 9 protein_coding havana_homo_sapiens_37 ENST00000491747
#> 10 protein_coding havana_homo_sapiens_37 ENST00000484087
#> 11 protein_coding havana_homo_sapiens_37 ENST00000478531
#> 12 protein_coding havana_homo_sapiens_37 ENST00000493919
#> 13 retained_intron havana_homo_sapiens_37 ENST00000472490
#> 14 protein_coding havana_homo_sapiens_37 ENST00000487825
#> 15 protein_coding havana_homo_sapiens_37 ENST00000461574
#> 16 retained_intron havana_homo_sapiens_37 ENST00000467274
#> 17 non_stop_decay havana_homo_sapiens_37 ENST00000412061
#> 18 protein_coding havana_homo_sapiens_37 ENST00000470026
#> 19 protein_coding havana_homo_sapiens_37 ENST00000477152
#> 20 nonsense_mediated_decay havana_homo_sapiens_37 ENST00000492859
#> 21 protein_coding havana_homo_sapiens_37 ENST00000497488
#> 22 protein_coding havana_homo_sapiens_37 ENST00000494123
#> 23 protein_coding havana_homo_sapiens_37 ENST00000473961
#> 24 protein_coding havana_homo_sapiens_37 ENST00000476777
#> 25 nonsense_mediated_decay havana_homo_sapiens_37 ENST00000461798
#> 26 protein_coding havana_homo_sapiens_37 ENST00000489037
#> 27 protein_coding ensembl_homo_sapiens_37 ENST00000354071
#> 28 protein_coding ensembl_homo_sapiens_37 ENST00000352993
#> 29 protein_coding ensembl_homo_sapiens_37 ENST00000346315
#> 30 protein_coding ensembl_homo_sapiens_37 ENST00000351666
#> 31 protein_coding ensembl_homo_sapiens_37 ENST00000309486
#> Translation.version Translation.length Translation.end Translation.species
#> 1 3 1863 41276113 human
#> 2 1 699 41276113 human
#> 3 1 173 41277202 human
#> 4 1 354 41226495 human
#> 5 1 96 41202109 human
#> 6 1 1816 41258543 human
#> 7 2 1884 41276113 human
#> 8 1 63 41276113 human
#> 9 2 759 41276113 human
#> 10 1 498 41256933 human
#> 11 1 623 41276113 human
#> 12 1 572 41258543 human
#> 13 NA NA NA <NA>
#> 14 1 266 41256933 human
#> 15 1 242 41243841 human
#> 16 NA NA NA <NA>
#> 17 3 437 41247883 human
#> 18 1 649 41276113 human
#> 19 1 622 41276113 human
#> 20 1 59 41276113 human
#> 21 1 177 41246659 human
#> 22 1 473 41276113 human
#> 23 1 319 41256908 human
#> 24 1 222 41276113 human
#> 25 1 63 41276113 human
#> 26 1 98 41276113 human
#> 27 6 1598 41276113 human
#> 28 5 721 41276113 human
#> 29 4 1624 41276113 human
#> 30 3 680 41276113 human
#> 31 4 1567 41246659 human
#> Translation.start Translation.object_type Translation.db_type
#> 1 41197695 Translation core
#> 2 41197801 Translation core
#> 3 41197695 Translation core
#> 4 41197695 Translation core
#> 5 41197695 Translation core
#> 6 41197695 Translation core
#> 7 41197695 Translation core
#> 8 41256972 Translation core
#> 9 41197695 Translation core
#> 10 41215361 Translation core
#> 11 41215361 Translation core
#> 12 41215377 Translation core
#> 13 NA <NA> <NA>
#> 14 41228505 Translation core
#> 15 41228554 Translation core
#> 16 NA <NA> <NA>
#> 17 41245587 Translation core
#> 18 41245601 Translation core
#> 19 41245603 Translation core
#> 20 41262552 Translation core
#> 21 41246129 Translation core
#> 22 41246129 Translation core
#> 23 41246187 Translation core
#> 24 41247863 Translation core
#> 25 41256972 Translation core
#> 26 41256206 Translation core
#> 27 41197695 Translation core
#> 28 41197695 Translation core
#> 29 41197695 Translation core
#> 30 41197695 Translation core
#> 31 41197695 Translation core
#> Translation.id Translation.Parent strand Exon is_canonical
#> 1 ENSP00000350283 ENST00000357654 -1 c("core".... 0
#> 2 ENSP00000417148 ENST00000468300 -1 c("ENSE0.... 0
#> 3 ENSP00000465818 ENST00000586385 -1 c(412771.... 0
#> 4 ENSP00000467329 ENST00000591534 -1 c("17", .... 0
#> 5 ENSP00000465347 ENST00000591849 -1 c("GRCh3.... 0
#> 6 ENSP00000418775 ENST00000493795 -1 c("ENSE0.... 0
#> 7 ENSP00000418960 ENST00000471181 -1 c("core".... 1
#> 8 ENSP00000418548 ENST00000461221 -1 c("Exon".... 0
#> 9 ENSP00000420705 ENST00000491747 -1 c("Exon".... 0
#> 10 ENSP00000419481 ENST00000484087 -1 c("human.... 0
#> 11 ENSP00000420412 ENST00000478531 -1 c(412773.... 0
#> 12 ENSP00000418819 ENST00000493919 -1 c("ENSE0.... 0
#> 13 <NA> <NA> -1 c("Exon".... 0
#> 14 ENSP00000418212 ENST00000487825 -1 c("17", .... 0
#> 15 ENSP00000417241 ENST00000461574 -1 c("Exon".... 0
#> 16 <NA> <NA> -1 c("core".... 0
#> 17 ENSP00000397145 ENST00000412061 -1 c(1, 1),.... 0
#> 18 ENSP00000419274 ENST00000470026 -1 c(1, 1, .... 0
#> 19 ENSP00000419988 ENST00000477152 -1 c(1, 1, .... 0
#> 20 ENSP00000420253 ENST00000492859 -1 c("17", .... 0
#> 21 ENSP00000418986 ENST00000497488 -1 c(412773.... 0
#> 22 ENSP00000419103 ENST00000494123 -1 c("ENSE0.... 0
#> 23 ENSP00000420201 ENST00000473961 -1 c("human.... 0
#> 24 ENSP00000417554 ENST00000476777 -1 c(-1, -1.... 0
#> 25 ENSP00000417988 ENST00000461798 -1 c("Exon".... 0
#> 26 ENSP00000420781 ENST00000489037 -1 c("ENSE0.... 0
#> 27 ENSP00000326002 ENST00000354071 -1 c(1, 1, .... 0
#> 28 ENSP00000312236 ENST00000352993 -1 c("Exon".... 0
#> 29 ENSP00000246907 ENST00000346315 -1 c("ENSE0.... 0
#> 30 ENSP00000338007 ENST00000351666 -1 c("17", .... 0
#> 31 ENSP00000310938 ENST00000309486 -1 c(412772.... 0
#> seq_region_name species
#> 1 17 human
#> 2 17 human
#> 3 17 human
#> 4 17 human
#> 5 17 human
#> 6 17 human
#> 7 17 human
#> 8 17 human
#> 9 17 human
#> 10 17 human
#> 11 17 human
#> 12 17 human
#> 13 17 human
#> 14 17 human
#> 15 17 human
#> 16 17 human
#> 17 17 human
#> 18 17 human
#> 19 17 human
#> 20 17 human
#> 21 17 human
#> 22 17 human
#> 23 17 human
#> 24 17 human
#> 25 17 human
#> 26 17 human
#> 27 17 human
#> 28 17 human
#> 29 17 human
#> 30 17 human
#> 31 17 human
#>
#> $species
#> [1] "human"
#>
#> $strand
#> [1] -1
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $start
#> [1] 41196312
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $end
#> [1] 41277500
#>
#> $version
#> [1] 15
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $object_type
#> [1] "Gene"
#>
#> $db_type
#> [1] "core"
#>
queryEnsemblByGene("ENSG00000139618")
#> $seq_region_name
#> [1] "13"
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $species
#> [1] "homo_sapiens"
#>
#> $description
#> [1] "breast cancer 2, early onset [Source:HGNC Symbol;Acc:1101]"
#>
#> $canonical_transcript
#> [1] "ENST00000544455.1"
#>
#> $end
#> [1] 32973805
#>
#> $strand
#> [1] 1
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $Transcript
#> source is_canonical biotype species
#> 1 ensembl_havana 0 protein_coding homo_sapiens
#> 2 havana 0 protein_coding homo_sapiens
#> 3 havana 0 nonsense_mediated_decay homo_sapiens
#> 4 havana 0 nonsense_mediated_decay homo_sapiens
#> 5 havana 0 retained_intron homo_sapiens
#> 6 ensembl 1 protein_coding homo_sapiens
#> seq_region_name Parent end logic_name strand
#> 1 13 ENSG00000139618 32973347 ensembl_havana_transcript 1
#> 2 13 ENSG00000139618 32907428 havana_homo_sapiens_37 1
#> 3 13 ENSG00000139618 32953632 havana_homo_sapiens_37 1
#> 4 13 ENSG00000139618 32972409 havana_homo_sapiens_37 1
#> 5 13 ENSG00000139618 32972585 havana_homo_sapiens_37 1
#> 6 13 ENSG00000139618 32973805 ensembl_homo_sapiens_37 1
#> Translation.id Translation.end Translation.length Translation.Parent
#> 1 ENSP00000369497 32972907 3418 ENST00000380152
#> 2 ENSP00000435699 32907428 481 ENST00000530893
#> 3 ENSP00000433168 32950807 64 ENST00000528762
#> 4 ENSP00000434898 32970229 186 ENST00000470094
#> 5 <NA> NA NA <NA>
#> 6 ENSP00000439902 32972907 3418 ENST00000544455
#> Translation.start Translation.species Translation.version Translation.db_type
#> 1 32890598 homo_sapiens 3 core
#> 2 32899266 homo_sapiens 2 core
#> 3 32945108 homo_sapiens 1 core
#> 4 32953977 homo_sapiens 1 core
#> 5 NA <NA> NA <NA>
#> 6 32890598 homo_sapiens 1 core
#> Translation.object_type object_type Exon db_type version
#> 1 Translation Transcript c("core".... core 3
#> 2 Translation Transcript c("Exon".... core 2
#> 3 Translation Transcript c("Exon".... core 1
#> 4 Translation Transcript c(1, 1, .... core 1
#> 5 <NA> Transcript c("Exon".... core 1
#> 6 Translation Transcript c(328898.... core 1
#> gencode_primary start length display_name assembly_name id
#> 1 0 32889611 10930 BRCA2-001 GRCh37 ENST00000380152
#> 2 0 32889642 2011 BRCA2-003 GRCh37 ENST00000530893
#> 3 0 32945108 495 BRCA2-005 GRCh37 ENST00000528762
#> 4 0 32953977 842 BRCA2-002 GRCh37 ENST00000470094
#> 5 0 32970946 523 BRCA2-006 GRCh37 ENST00000533776
#> 6 0 32889617 10984 BRCA2-201 GRCh37 ENST00000544455
#>
#> $version
#> [1] 10
#>
#> $start
#> [1] 32889611
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $display_name
#> [1] "BRCA2"
#>
#> $id
#> [1] "ENSG00000139618"
#>
#> $object_type
#> [1] "Gene"
#>
#> $db_type
#> [1] "core"
#>
event <- "SE_17_-_41251792_41249306_41249261_41246877_BRCA1"
queryEnsemblByEvent(event, species="human", assembly="hg19")
#> $object_type
#> [1] "Gene"
#>
#> $db_type
#> [1] "core"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $version
#> [1] 15
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $end
#> [1] 41277500
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $start
#> [1] 41196312
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $strand
#> [1] -1
#>
#> $Transcript
#> start assembly_name end length display_name version Parent
#> 1 41196312 GRCh37 41277387 7094 BRCA1-001 3 ENSG00000012048
#> 2 41196822 GRCh37 41277468 3273 BRCA1-007 1 ENSG00000012048
#> 3 41197580 GRCh37 41277346 781 BRCA1-023 1 ENSG00000012048
#> 4 41197580 GRCh37 41277346 1282 BRCA1-024 1 ENSG00000012048
#> 5 41197580 GRCh37 41277346 563 BRCA1-025 1 ENSG00000012048
#> 6 41197646 GRCh37 41277419 5732 BRCA1-006 1 ENSG00000012048
#> 7 41197646 GRCh37 41277500 5936 BRCA1-005 2 ENSG00000012048
#> 8 41197695 GRCh37 41277305 5693 BRCA1-010 1 ENSG00000012048
#> 9 41197695 GRCh37 41277373 2379 BRCA1-014 2 ENSG00000012048
#> 10 41215361 GRCh37 41256933 1495 BRCA1-015 1 ENSG00000012048
#> 11 41215361 GRCh37 41277376 1972 BRCA1-009 1 ENSG00000012048
#> 12 41215377 GRCh37 41277419 1948 BRCA1-008 1 ENSG00000012048
#> 13 41219291 GRCh37 41223083 561 BRCA1-021 1 ENSG00000012048
#> 14 41228505 GRCh37 41256933 800 BRCA1-019 1 ENSG00000012048
#> 15 41228554 GRCh37 41243841 726 BRCA1-022 1 ENSG00000012048
#> 16 41243115 GRCh37 41277332 4497 BRCA1-012 1 ENSG00000012048
#> 17 41245587 GRCh37 41247883 1312 BRCA1-026 3 ENSG00000012048
#> 18 41245601 GRCh37 41277340 2108 BRCA1-011 1 ENSG00000012048
#> 19 41245603 GRCh37 41277381 1980 BRCA1-004 1 ENSG00000012048
#> 20 41246129 GRCh37 41277317 1584 BRCA1-002 1 ENSG00000012048
#> 21 41246129 GRCh37 41277317 779 BRCA1-003 1 ENSG00000012048
#> 22 41246129 GRCh37 41277467 1612 BRCA1-013 1 ENSG00000012048
#> 23 41246187 GRCh37 41256908 958 BRCA1-018 1 ENSG00000012048
#> 24 41247863 GRCh37 41277370 769 BRCA1-017 1 ENSG00000012048
#> 25 41251848 GRCh37 41277387 582 BRCA1-020 1 ENSG00000012048
#> 26 41256206 GRCh37 41277338 455 BRCA1-016 1 ENSG00000012048
#> 27 41196313 GRCh37 41277500 6411 BRCA1-205 3 ENSG00000012048
#> 28 41196313 GRCh37 41277500 3780 BRCA1-204 3 ENSG00000012048
#> 29 41196313 GRCh37 41277468 6451 BRCA1-202 3 ENSG00000012048
#> 30 41196313 GRCh37 41276132 3444 BRCA1-203 3 ENSG00000012048
#> 31 41196313 GRCh37 41277468 7114 BRCA1-201 4 ENSG00000012048
#> source db_type object_type Exon seq_region_name is_canonical
#> 1 ensembl_havana core Transcript c("17", .... 17 0
#> 2 ensembl_havana core Transcript c("ENSE0.... 17 0
#> 3 havana core Transcript c(-1, -1.... 17 0
#> 4 havana core Transcript c("17", .... 17 0
#> 5 havana core Transcript c(412772.... 17 0
#> 6 ensembl_havana core Transcript c("core".... 17 0
#> 7 ensembl_havana core Transcript c(1, 1, .... 17 1
#> 8 havana core Transcript c("core".... 17 0
#> 9 havana core Transcript c(412773.... 17 0
#> 10 havana core Transcript c("ENSE0.... 17 0
#> 11 havana core Transcript c(412772.... 17 0
#> 12 havana core Transcript c(412772.... 17 0
#> 13 havana core Transcript c(1, 1),.... 17 0
#> 14 havana core Transcript c("ENSE0.... 17 0
#> 15 havana core Transcript c("17", .... 17 0
#> 16 havana core Transcript c(1, 1, .... 17 0
#> 17 havana core Transcript c("ENSE0.... 17 0
#> 18 havana core Transcript c("ENSE0.... 17 0
#> 19 havana core Transcript c(-1, -1.... 17 0
#> 20 havana core Transcript c(-1, -1.... 17 0
#> 21 havana core Transcript c("core".... 17 0
#> 22 havana core Transcript c(412774.... 17 0
#> 23 havana core Transcript c("core".... 17 0
#> 24 havana core Transcript c("Exon".... 17 0
#> 25 havana core Transcript c(412773.... 17 0
#> 26 havana core Transcript c(412771.... 17 0
#> 27 ensembl core Transcript c("GRCh3.... 17 0
#> 28 ensembl core Transcript c("GRCh3.... 17 0
#> 29 ensembl core Transcript c(412772.... 17 0
#> 30 ensembl core Transcript c("ENSE0.... 17 0
#> 31 ensembl core Transcript c("Exon".... 17 0
#> species Translation.Parent Translation.id Translation.db_type
#> 1 human ENST00000357654 ENSP00000350283 core
#> 2 human ENST00000468300 ENSP00000417148 core
#> 3 human ENST00000586385 ENSP00000465818 core
#> 4 human ENST00000591534 ENSP00000467329 core
#> 5 human ENST00000591849 ENSP00000465347 core
#> 6 human ENST00000493795 ENSP00000418775 core
#> 7 human ENST00000471181 ENSP00000418960 core
#> 8 human ENST00000461221 ENSP00000418548 core
#> 9 human ENST00000491747 ENSP00000420705 core
#> 10 human ENST00000484087 ENSP00000419481 core
#> 11 human ENST00000478531 ENSP00000420412 core
#> 12 human ENST00000493919 ENSP00000418819 core
#> 13 human <NA> <NA> <NA>
#> 14 human ENST00000487825 ENSP00000418212 core
#> 15 human ENST00000461574 ENSP00000417241 core
#> 16 human <NA> <NA> <NA>
#> 17 human ENST00000412061 ENSP00000397145 core
#> 18 human ENST00000470026 ENSP00000419274 core
#> 19 human ENST00000477152 ENSP00000419988 core
#> 20 human ENST00000492859 ENSP00000420253 core
#> 21 human ENST00000497488 ENSP00000418986 core
#> 22 human ENST00000494123 ENSP00000419103 core
#> 23 human ENST00000473961 ENSP00000420201 core
#> 24 human ENST00000476777 ENSP00000417554 core
#> 25 human ENST00000461798 ENSP00000417988 core
#> 26 human ENST00000489037 ENSP00000420781 core
#> 27 human ENST00000354071 ENSP00000326002 core
#> 28 human ENST00000352993 ENSP00000312236 core
#> 29 human ENST00000346315 ENSP00000246907 core
#> 30 human ENST00000351666 ENSP00000338007 core
#> 31 human ENST00000309486 ENSP00000310938 core
#> Translation.object_type Translation.start Translation.species
#> 1 Translation 41197695 human
#> 2 Translation 41197801 human
#> 3 Translation 41197695 human
#> 4 Translation 41197695 human
#> 5 Translation 41197695 human
#> 6 Translation 41197695 human
#> 7 Translation 41197695 human
#> 8 Translation 41256972 human
#> 9 Translation 41197695 human
#> 10 Translation 41215361 human
#> 11 Translation 41215361 human
#> 12 Translation 41215377 human
#> 13 <NA> NA <NA>
#> 14 Translation 41228505 human
#> 15 Translation 41228554 human
#> 16 <NA> NA <NA>
#> 17 Translation 41245587 human
#> 18 Translation 41245601 human
#> 19 Translation 41245603 human
#> 20 Translation 41262552 human
#> 21 Translation 41246129 human
#> 22 Translation 41246129 human
#> 23 Translation 41246187 human
#> 24 Translation 41247863 human
#> 25 Translation 41256972 human
#> 26 Translation 41256206 human
#> 27 Translation 41197695 human
#> 28 Translation 41197695 human
#> 29 Translation 41197695 human
#> 30 Translation 41197695 human
#> 31 Translation 41197695 human
#> Translation.version Translation.length Translation.end strand
#> 1 3 1863 41276113 -1
#> 2 1 699 41276113 -1
#> 3 1 173 41277202 -1
#> 4 1 354 41226495 -1
#> 5 1 96 41202109 -1
#> 6 1 1816 41258543 -1
#> 7 2 1884 41276113 -1
#> 8 1 63 41276113 -1
#> 9 2 759 41276113 -1
#> 10 1 498 41256933 -1
#> 11 1 623 41276113 -1
#> 12 1 572 41258543 -1
#> 13 NA NA NA -1
#> 14 1 266 41256933 -1
#> 15 1 242 41243841 -1
#> 16 NA NA NA -1
#> 17 3 437 41247883 -1
#> 18 1 649 41276113 -1
#> 19 1 622 41276113 -1
#> 20 1 59 41276113 -1
#> 21 1 177 41246659 -1
#> 22 1 473 41276113 -1
#> 23 1 319 41256908 -1
#> 24 1 222 41276113 -1
#> 25 1 63 41276113 -1
#> 26 1 98 41276113 -1
#> 27 6 1598 41276113 -1
#> 28 5 721 41276113 -1
#> 29 4 1624 41276113 -1
#> 30 3 680 41276113 -1
#> 31 4 1567 41246659 -1
#> biotype logic_name id
#> 1 protein_coding ensembl_havana_transcript ENST00000357654
#> 2 protein_coding ensembl_havana_transcript ENST00000468300
#> 3 protein_coding havana_homo_sapiens_37 ENST00000586385
#> 4 protein_coding havana_homo_sapiens_37 ENST00000591534
#> 5 protein_coding havana_homo_sapiens_37 ENST00000591849
#> 6 protein_coding ensembl_havana_transcript ENST00000493795
#> 7 protein_coding ensembl_havana_transcript ENST00000471181
#> 8 nonsense_mediated_decay havana_homo_sapiens_37 ENST00000461221
#> 9 protein_coding havana_homo_sapiens_37 ENST00000491747
#> 10 protein_coding havana_homo_sapiens_37 ENST00000484087
#> 11 protein_coding havana_homo_sapiens_37 ENST00000478531
#> 12 protein_coding havana_homo_sapiens_37 ENST00000493919
#> 13 retained_intron havana_homo_sapiens_37 ENST00000472490
#> 14 protein_coding havana_homo_sapiens_37 ENST00000487825
#> 15 protein_coding havana_homo_sapiens_37 ENST00000461574
#> 16 retained_intron havana_homo_sapiens_37 ENST00000467274
#> 17 non_stop_decay havana_homo_sapiens_37 ENST00000412061
#> 18 protein_coding havana_homo_sapiens_37 ENST00000470026
#> 19 protein_coding havana_homo_sapiens_37 ENST00000477152
#> 20 nonsense_mediated_decay havana_homo_sapiens_37 ENST00000492859
#> 21 protein_coding havana_homo_sapiens_37 ENST00000497488
#> 22 protein_coding havana_homo_sapiens_37 ENST00000494123
#> 23 protein_coding havana_homo_sapiens_37 ENST00000473961
#> 24 protein_coding havana_homo_sapiens_37 ENST00000476777
#> 25 nonsense_mediated_decay havana_homo_sapiens_37 ENST00000461798
#> 26 protein_coding havana_homo_sapiens_37 ENST00000489037
#> 27 protein_coding ensembl_homo_sapiens_37 ENST00000354071
#> 28 protein_coding ensembl_homo_sapiens_37 ENST00000352993
#> 29 protein_coding ensembl_homo_sapiens_37 ENST00000346315
#> 30 protein_coding ensembl_homo_sapiens_37 ENST00000351666
#> 31 protein_coding ensembl_homo_sapiens_37 ENST00000309486
#> gencode_primary
#> 1 0
#> 2 0
#> 3 0
#> 4 0
#> 5 0
#> 6 0
#> 7 0
#> 8 0
#> 9 0
#> 10 0
#> 11 0
#> 12 0
#> 13 0
#> 14 0
#> 15 0
#> 16 0
#> 17 0
#> 18 0
#> 19 0
#> 20 0
#> 21 0
#> 22 0
#> 23 0
#> 24 0
#> 25 0
#> 26 0
#> 27 0
#> 28 0
#> 29 0
#> 30 0
#> 31 0
#>
#> $species
#> [1] "human"
#>
#> $seq_region_name
#> [1] "17"
#>