Query information from Ensembl
Usage
queryEnsemblByGene(gene, species = NULL, assembly = NULL)
queryEnsemblByEvent(event, species = NULL, assembly = NULL, data = NULL)See also
Other functions to retrieve external information:
ensemblToUniprot(),
plotProtein(),
plotTranscripts()
Examples
queryEnsemblByGene("BRCA1", "human", "hg19")
#> $source
#> [1] "ensembl_havana"
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $start
#> [1] 41196312
#>
#> $Transcript
#> gencode_primary id assembly_name version
#> 1 0 ENST00000357654 GRCh37 3
#> 2 0 ENST00000468300 GRCh37 1
#> 3 0 ENST00000586385 GRCh37 1
#> 4 0 ENST00000591534 GRCh37 1
#> 5 0 ENST00000591849 GRCh37 1
#> 6 0 ENST00000493795 GRCh37 1
#> 7 0 ENST00000471181 GRCh37 2
#> 8 0 ENST00000461221 GRCh37 1
#> 9 0 ENST00000491747 GRCh37 2
#> 10 0 ENST00000484087 GRCh37 1
#> 11 0 ENST00000478531 GRCh37 1
#> 12 0 ENST00000493919 GRCh37 1
#> 13 0 ENST00000472490 GRCh37 1
#> 14 0 ENST00000487825 GRCh37 1
#> 15 0 ENST00000461574 GRCh37 1
#> 16 0 ENST00000467274 GRCh37 1
#> 17 0 ENST00000412061 GRCh37 3
#> 18 0 ENST00000470026 GRCh37 1
#> 19 0 ENST00000477152 GRCh37 1
#> 20 0 ENST00000492859 GRCh37 1
#> 21 0 ENST00000497488 GRCh37 1
#> 22 0 ENST00000494123 GRCh37 1
#> 23 0 ENST00000473961 GRCh37 1
#> 24 0 ENST00000476777 GRCh37 1
#> 25 0 ENST00000461798 GRCh37 1
#> 26 0 ENST00000489037 GRCh37 1
#> 27 0 ENST00000354071 GRCh37 3
#> 28 0 ENST00000352993 GRCh37 3
#> 29 0 ENST00000346315 GRCh37 3
#> 30 0 ENST00000351666 GRCh37 3
#> 31 0 ENST00000309486 GRCh37 4
#> logic_name biotype object_type length
#> 1 ensembl_havana_transcript protein_coding Transcript 7094
#> 2 ensembl_havana_transcript protein_coding Transcript 3273
#> 3 havana_homo_sapiens_37 protein_coding Transcript 781
#> 4 havana_homo_sapiens_37 protein_coding Transcript 1282
#> 5 havana_homo_sapiens_37 protein_coding Transcript 563
#> 6 ensembl_havana_transcript protein_coding Transcript 5732
#> 7 ensembl_havana_transcript protein_coding Transcript 5936
#> 8 havana_homo_sapiens_37 nonsense_mediated_decay Transcript 5693
#> 9 havana_homo_sapiens_37 protein_coding Transcript 2379
#> 10 havana_homo_sapiens_37 protein_coding Transcript 1495
#> 11 havana_homo_sapiens_37 protein_coding Transcript 1972
#> 12 havana_homo_sapiens_37 protein_coding Transcript 1948
#> 13 havana_homo_sapiens_37 retained_intron Transcript 561
#> 14 havana_homo_sapiens_37 protein_coding Transcript 800
#> 15 havana_homo_sapiens_37 protein_coding Transcript 726
#> 16 havana_homo_sapiens_37 retained_intron Transcript 4497
#> 17 havana_homo_sapiens_37 non_stop_decay Transcript 1312
#> 18 havana_homo_sapiens_37 protein_coding Transcript 2108
#> 19 havana_homo_sapiens_37 protein_coding Transcript 1980
#> 20 havana_homo_sapiens_37 nonsense_mediated_decay Transcript 1584
#> 21 havana_homo_sapiens_37 protein_coding Transcript 779
#> 22 havana_homo_sapiens_37 protein_coding Transcript 1612
#> 23 havana_homo_sapiens_37 protein_coding Transcript 958
#> 24 havana_homo_sapiens_37 protein_coding Transcript 769
#> 25 havana_homo_sapiens_37 nonsense_mediated_decay Transcript 582
#> 26 havana_homo_sapiens_37 protein_coding Transcript 455
#> 27 ensembl_homo_sapiens_37 protein_coding Transcript 6411
#> 28 ensembl_homo_sapiens_37 protein_coding Transcript 3780
#> 29 ensembl_homo_sapiens_37 protein_coding Transcript 6451
#> 30 ensembl_homo_sapiens_37 protein_coding Transcript 3444
#> 31 ensembl_homo_sapiens_37 protein_coding Transcript 7114
#> source start display_name Translation.version Translation.db_type
#> 1 ensembl_havana 41196312 BRCA1-001 3 core
#> 2 ensembl_havana 41196822 BRCA1-007 1 core
#> 3 havana 41197580 BRCA1-023 1 core
#> 4 havana 41197580 BRCA1-024 1 core
#> 5 havana 41197580 BRCA1-025 1 core
#> 6 ensembl_havana 41197646 BRCA1-006 1 core
#> 7 ensembl_havana 41197646 BRCA1-005 2 core
#> 8 havana 41197695 BRCA1-010 1 core
#> 9 havana 41197695 BRCA1-014 2 core
#> 10 havana 41215361 BRCA1-015 1 core
#> 11 havana 41215361 BRCA1-009 1 core
#> 12 havana 41215377 BRCA1-008 1 core
#> 13 havana 41219291 BRCA1-021 NA <NA>
#> 14 havana 41228505 BRCA1-019 1 core
#> 15 havana 41228554 BRCA1-022 1 core
#> 16 havana 41243115 BRCA1-012 NA <NA>
#> 17 havana 41245587 BRCA1-026 3 core
#> 18 havana 41245601 BRCA1-011 1 core
#> 19 havana 41245603 BRCA1-004 1 core
#> 20 havana 41246129 BRCA1-002 1 core
#> 21 havana 41246129 BRCA1-003 1 core
#> 22 havana 41246129 BRCA1-013 1 core
#> 23 havana 41246187 BRCA1-018 1 core
#> 24 havana 41247863 BRCA1-017 1 core
#> 25 havana 41251848 BRCA1-020 1 core
#> 26 havana 41256206 BRCA1-016 1 core
#> 27 ensembl 41196313 BRCA1-205 6 core
#> 28 ensembl 41196313 BRCA1-204 5 core
#> 29 ensembl 41196313 BRCA1-202 4 core
#> 30 ensembl 41196313 BRCA1-203 3 core
#> 31 ensembl 41196313 BRCA1-201 4 core
#> Translation.object_type Translation.Parent Translation.end Translation.id
#> 1 Translation ENST00000357654 41276113 ENSP00000350283
#> 2 Translation ENST00000468300 41276113 ENSP00000417148
#> 3 Translation ENST00000586385 41277202 ENSP00000465818
#> 4 Translation ENST00000591534 41226495 ENSP00000467329
#> 5 Translation ENST00000591849 41202109 ENSP00000465347
#> 6 Translation ENST00000493795 41258543 ENSP00000418775
#> 7 Translation ENST00000471181 41276113 ENSP00000418960
#> 8 Translation ENST00000461221 41276113 ENSP00000418548
#> 9 Translation ENST00000491747 41276113 ENSP00000420705
#> 10 Translation ENST00000484087 41256933 ENSP00000419481
#> 11 Translation ENST00000478531 41276113 ENSP00000420412
#> 12 Translation ENST00000493919 41258543 ENSP00000418819
#> 13 <NA> <NA> NA <NA>
#> 14 Translation ENST00000487825 41256933 ENSP00000418212
#> 15 Translation ENST00000461574 41243841 ENSP00000417241
#> 16 <NA> <NA> NA <NA>
#> 17 Translation ENST00000412061 41247883 ENSP00000397145
#> 18 Translation ENST00000470026 41276113 ENSP00000419274
#> 19 Translation ENST00000477152 41276113 ENSP00000419988
#> 20 Translation ENST00000492859 41276113 ENSP00000420253
#> 21 Translation ENST00000497488 41246659 ENSP00000418986
#> 22 Translation ENST00000494123 41276113 ENSP00000419103
#> 23 Translation ENST00000473961 41256908 ENSP00000420201
#> 24 Translation ENST00000476777 41276113 ENSP00000417554
#> 25 Translation ENST00000461798 41276113 ENSP00000417988
#> 26 Translation ENST00000489037 41276113 ENSP00000420781
#> 27 Translation ENST00000354071 41276113 ENSP00000326002
#> 28 Translation ENST00000352993 41276113 ENSP00000312236
#> 29 Translation ENST00000346315 41276113 ENSP00000246907
#> 30 Translation ENST00000351666 41276113 ENSP00000338007
#> 31 Translation ENST00000309486 41246659 ENSP00000310938
#> Translation.start Translation.species Translation.length Parent
#> 1 41197695 human 1863 ENSG00000012048
#> 2 41197801 human 699 ENSG00000012048
#> 3 41197695 human 173 ENSG00000012048
#> 4 41197695 human 354 ENSG00000012048
#> 5 41197695 human 96 ENSG00000012048
#> 6 41197695 human 1816 ENSG00000012048
#> 7 41197695 human 1884 ENSG00000012048
#> 8 41256972 human 63 ENSG00000012048
#> 9 41197695 human 759 ENSG00000012048
#> 10 41215361 human 498 ENSG00000012048
#> 11 41215361 human 623 ENSG00000012048
#> 12 41215377 human 572 ENSG00000012048
#> 13 NA <NA> NA ENSG00000012048
#> 14 41228505 human 266 ENSG00000012048
#> 15 41228554 human 242 ENSG00000012048
#> 16 NA <NA> NA ENSG00000012048
#> 17 41245587 human 437 ENSG00000012048
#> 18 41245601 human 649 ENSG00000012048
#> 19 41245603 human 622 ENSG00000012048
#> 20 41262552 human 59 ENSG00000012048
#> 21 41246129 human 177 ENSG00000012048
#> 22 41246129 human 473 ENSG00000012048
#> 23 41246187 human 319 ENSG00000012048
#> 24 41247863 human 222 ENSG00000012048
#> 25 41256972 human 63 ENSG00000012048
#> 26 41256206 human 98 ENSG00000012048
#> 27 41197695 human 1598 ENSG00000012048
#> 28 41197695 human 721 ENSG00000012048
#> 29 41197695 human 1624 ENSG00000012048
#> 30 41197695 human 680 ENSG00000012048
#> 31 41197695 human 1567 ENSG00000012048
#> seq_region_name end db_type strand is_canonical Exon species
#> 1 17 41277387 core -1 0 c("human.... human
#> 2 17 41277468 core -1 0 c("human.... human
#> 3 17 41277346 core -1 0 c("17", .... human
#> 4 17 41277346 core -1 0 c("17", .... human
#> 5 17 41277346 core -1 0 c(-1, -1.... human
#> 6 17 41277419 core -1 0 c(1, 1, .... human
#> 7 17 41277500 core -1 1 c(412775.... human
#> 8 17 41277305 core -1 0 c(412771.... human
#> 9 17 41277373 core -1 0 c(-1, -1.... human
#> 10 17 41256933 core -1 0 c(-1, -1.... human
#> 11 17 41277376 core -1 0 c("17", .... human
#> 12 17 41277419 core -1 0 c("core".... human
#> 13 17 41223083 core -1 0 c(1, 1),.... human
#> 14 17 41256933 core -1 0 c(-1, -1.... human
#> 15 17 41243841 core -1 0 c("ENSE0.... human
#> 16 17 41277332 core -1 0 c(-1, -1.... human
#> 17 17 41247883 core -1 0 c("17", .... human
#> 18 17 41277340 core -1 0 c("17", .... human
#> 19 17 41277381 core -1 0 c("human.... human
#> 20 17 41277317 core -1 0 c(-1, -1.... human
#> 21 17 41277317 core -1 0 c(1, 1),.... human
#> 22 17 41277467 core -1 0 c("GRCh3.... human
#> 23 17 41256908 core -1 0 c(412569.... human
#> 24 17 41277370 core -1 0 c(-1, -1.... human
#> 25 17 41277387 core -1 0 c(-1, -1.... human
#> 26 17 41277338 core -1 0 c(-1, -1.... human
#> 27 17 41277500 core -1 0 c(-1, -1.... human
#> 28 17 41277500 core -1 0 c("core".... human
#> 29 17 41277468 core -1 0 c("core".... human
#> 30 17 41276132 core -1 0 c("core".... human
#> 31 17 41277468 core -1 0 c("17", .... human
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $object_type
#> [1] "Gene"
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $version
#> [1] 15
#>
#> $strand
#> [1] -1
#>
#> $species
#> [1] "human"
#>
#> $end
#> [1] 41277500
#>
#> $seq_region_name
#> [1] "17"
#>
#> $db_type
#> [1] "core"
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
queryEnsemblByGene("ENSG00000139618")
#> $source
#> [1] "ensembl_havana"
#>
#> $strand
#> [1] 1
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $canonical_transcript
#> [1] "ENST00000544455.1"
#>
#> $id
#> [1] "ENSG00000139618"
#>
#> $Transcript
#> start length display_name gencode_primary Translation.length
#> 1 32889611 10930 BRCA2-001 0 3418
#> 2 32889642 2011 BRCA2-003 0 481
#> 3 32945108 495 BRCA2-005 0 64
#> 4 32953977 842 BRCA2-002 0 186
#> 5 32970946 523 BRCA2-006 0 NA
#> 6 32889617 10984 BRCA2-201 0 3418
#> Translation.start Translation.id Translation.version Translation.db_type
#> 1 32890598 ENSP00000369497 3 core
#> 2 32899266 ENSP00000435699 2 core
#> 3 32945108 ENSP00000433168 1 core
#> 4 32953977 ENSP00000434898 1 core
#> 5 NA <NA> NA <NA>
#> 6 32890598 ENSP00000439902 1 core
#> Translation.end Translation.Parent Translation.object_type
#> 1 32972907 ENST00000380152 Translation
#> 2 32907428 ENST00000530893 Translation
#> 3 32950807 ENST00000528762 Translation
#> 4 32970229 ENST00000470094 Translation
#> 5 NA <NA> <NA>
#> 6 32972907 ENST00000544455 Translation
#> Translation.species end version assembly_name db_type Parent
#> 1 homo_sapiens 32973347 3 GRCh37 core ENSG00000139618
#> 2 homo_sapiens 32907428 2 GRCh37 core ENSG00000139618
#> 3 homo_sapiens 32953632 1 GRCh37 core ENSG00000139618
#> 4 homo_sapiens 32972409 1 GRCh37 core ENSG00000139618
#> 5 <NA> 32972585 1 GRCh37 core ENSG00000139618
#> 6 homo_sapiens 32973805 1 GRCh37 core ENSG00000139618
#> seq_region_name species strand source logic_name
#> 1 13 homo_sapiens 1 ensembl_havana ensembl_havana_transcript
#> 2 13 homo_sapiens 1 havana havana_homo_sapiens_37
#> 3 13 homo_sapiens 1 havana havana_homo_sapiens_37
#> 4 13 homo_sapiens 1 havana havana_homo_sapiens_37
#> 5 13 homo_sapiens 1 havana havana_homo_sapiens_37
#> 6 13 homo_sapiens 1 ensembl ensembl_homo_sapiens_37
#> is_canonical id biotype Exon object_type
#> 1 0 ENST00000380152 protein_coding c(328898.... Transcript
#> 2 0 ENST00000530893 protein_coding c("Exon".... Transcript
#> 3 0 ENST00000528762 nonsense_mediated_decay c(329452.... Transcript
#> 4 0 ENST00000470094 nonsense_mediated_decay c(1, 1, .... Transcript
#> 5 0 ENST00000533776 retained_intron c(1, 1),.... Transcript
#> 6 1 ENST00000544455 protein_coding c("13", .... Transcript
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $object_type
#> [1] "Gene"
#>
#> $start
#> [1] 32889611
#>
#> $display_name
#> [1] "BRCA2"
#>
#> $end
#> [1] 32973805
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $version
#> [1] 10
#>
#> $db_type
#> [1] "core"
#>
#> $seq_region_name
#> [1] "13"
#>
#> $description
#> [1] "breast cancer 2, early onset [Source:HGNC Symbol;Acc:1101]"
#>
#> $species
#> [1] "homo_sapiens"
#>
event <- "SE_17_-_41251792_41249306_41249261_41246877_BRCA1"
queryEnsemblByEvent(event, species="human", assembly="hg19")
#> $biotype
#> [1] "protein_coding"
#>
#> $object_type
#> [1] "Gene"
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $start
#> [1] 41196312
#>
#> $end
#> [1] 41277500
#>
#> $Transcript
#> gencode_primary logic_name Exon db_type end
#> 1 0 ensembl_havana_transcript c(412772.... core 41277387
#> 2 0 ensembl_havana_transcript c(-1, -1.... core 41277468
#> 3 0 havana_homo_sapiens_37 c(412773.... core 41277346
#> 4 0 havana_homo_sapiens_37 c("human.... core 41277346
#> 5 0 havana_homo_sapiens_37 c("human.... core 41277346
#> 6 0 ensembl_havana_transcript c("ENSE0.... core 41277419
#> 7 0 ensembl_havana_transcript c("ENSE0.... core 41277500
#> 8 0 havana_homo_sapiens_37 c(-1, -1.... core 41277305
#> 9 0 havana_homo_sapiens_37 c(1, 1, .... core 41277373
#> 10 0 havana_homo_sapiens_37 c("Exon".... core 41256933
#> 11 0 havana_homo_sapiens_37 c("Exon".... core 41277376
#> 12 0 havana_homo_sapiens_37 c(-1, -1.... core 41277419
#> 13 0 havana_homo_sapiens_37 c("human.... core 41223083
#> 14 0 havana_homo_sapiens_37 c("core".... core 41256933
#> 15 0 havana_homo_sapiens_37 c(-1, -1.... core 41243841
#> 16 0 havana_homo_sapiens_37 c(1, 1, .... core 41277332
#> 17 0 havana_homo_sapiens_37 c("Exon".... core 41247883
#> 18 0 havana_homo_sapiens_37 c(1, 1, .... core 41277340
#> 19 0 havana_homo_sapiens_37 c("ENSE0.... core 41277381
#> 20 0 havana_homo_sapiens_37 c(412773.... core 41277317
#> 21 0 havana_homo_sapiens_37 c("human.... core 41277317
#> 22 0 havana_homo_sapiens_37 c(412774.... core 41277467
#> 23 0 havana_homo_sapiens_37 c(1, 1, .... core 41256908
#> 24 0 havana_homo_sapiens_37 c("human.... core 41277370
#> 25 0 havana_homo_sapiens_37 c(1, 1, .... core 41277387
#> 26 0 havana_homo_sapiens_37 c(412773.... core 41277338
#> 27 0 ensembl_homo_sapiens_37 c(1, 1, .... core 41277500
#> 28 0 ensembl_homo_sapiens_37 c(1, 1, .... core 41277500
#> 29 0 ensembl_homo_sapiens_37 c("17", .... core 41277468
#> 30 0 ensembl_homo_sapiens_37 c("core".... core 41276132
#> 31 0 ensembl_homo_sapiens_37 c(1, 1, .... core 41277468
#> start object_type length biotype is_canonical species
#> 1 41196312 Transcript 7094 protein_coding 0 human
#> 2 41196822 Transcript 3273 protein_coding 0 human
#> 3 41197580 Transcript 781 protein_coding 0 human
#> 4 41197580 Transcript 1282 protein_coding 0 human
#> 5 41197580 Transcript 563 protein_coding 0 human
#> 6 41197646 Transcript 5732 protein_coding 0 human
#> 7 41197646 Transcript 5936 protein_coding 1 human
#> 8 41197695 Transcript 5693 nonsense_mediated_decay 0 human
#> 9 41197695 Transcript 2379 protein_coding 0 human
#> 10 41215361 Transcript 1495 protein_coding 0 human
#> 11 41215361 Transcript 1972 protein_coding 0 human
#> 12 41215377 Transcript 1948 protein_coding 0 human
#> 13 41219291 Transcript 561 retained_intron 0 human
#> 14 41228505 Transcript 800 protein_coding 0 human
#> 15 41228554 Transcript 726 protein_coding 0 human
#> 16 41243115 Transcript 4497 retained_intron 0 human
#> 17 41245587 Transcript 1312 non_stop_decay 0 human
#> 18 41245601 Transcript 2108 protein_coding 0 human
#> 19 41245603 Transcript 1980 protein_coding 0 human
#> 20 41246129 Transcript 1584 nonsense_mediated_decay 0 human
#> 21 41246129 Transcript 779 protein_coding 0 human
#> 22 41246129 Transcript 1612 protein_coding 0 human
#> 23 41246187 Transcript 958 protein_coding 0 human
#> 24 41247863 Transcript 769 protein_coding 0 human
#> 25 41251848 Transcript 582 nonsense_mediated_decay 0 human
#> 26 41256206 Transcript 455 protein_coding 0 human
#> 27 41196313 Transcript 6411 protein_coding 0 human
#> 28 41196313 Transcript 3780 protein_coding 0 human
#> 29 41196313 Transcript 6451 protein_coding 0 human
#> 30 41196313 Transcript 3444 protein_coding 0 human
#> 31 41196313 Transcript 7114 protein_coding 0 human
#> strand version display_name assembly_name source Parent
#> 1 -1 3 BRCA1-001 GRCh37 ensembl_havana ENSG00000012048
#> 2 -1 1 BRCA1-007 GRCh37 ensembl_havana ENSG00000012048
#> 3 -1 1 BRCA1-023 GRCh37 havana ENSG00000012048
#> 4 -1 1 BRCA1-024 GRCh37 havana ENSG00000012048
#> 5 -1 1 BRCA1-025 GRCh37 havana ENSG00000012048
#> 6 -1 1 BRCA1-006 GRCh37 ensembl_havana ENSG00000012048
#> 7 -1 2 BRCA1-005 GRCh37 ensembl_havana ENSG00000012048
#> 8 -1 1 BRCA1-010 GRCh37 havana ENSG00000012048
#> 9 -1 2 BRCA1-014 GRCh37 havana ENSG00000012048
#> 10 -1 1 BRCA1-015 GRCh37 havana ENSG00000012048
#> 11 -1 1 BRCA1-009 GRCh37 havana ENSG00000012048
#> 12 -1 1 BRCA1-008 GRCh37 havana ENSG00000012048
#> 13 -1 1 BRCA1-021 GRCh37 havana ENSG00000012048
#> 14 -1 1 BRCA1-019 GRCh37 havana ENSG00000012048
#> 15 -1 1 BRCA1-022 GRCh37 havana ENSG00000012048
#> 16 -1 1 BRCA1-012 GRCh37 havana ENSG00000012048
#> 17 -1 3 BRCA1-026 GRCh37 havana ENSG00000012048
#> 18 -1 1 BRCA1-011 GRCh37 havana ENSG00000012048
#> 19 -1 1 BRCA1-004 GRCh37 havana ENSG00000012048
#> 20 -1 1 BRCA1-002 GRCh37 havana ENSG00000012048
#> 21 -1 1 BRCA1-003 GRCh37 havana ENSG00000012048
#> 22 -1 1 BRCA1-013 GRCh37 havana ENSG00000012048
#> 23 -1 1 BRCA1-018 GRCh37 havana ENSG00000012048
#> 24 -1 1 BRCA1-017 GRCh37 havana ENSG00000012048
#> 25 -1 1 BRCA1-020 GRCh37 havana ENSG00000012048
#> 26 -1 1 BRCA1-016 GRCh37 havana ENSG00000012048
#> 27 -1 3 BRCA1-205 GRCh37 ensembl ENSG00000012048
#> 28 -1 3 BRCA1-204 GRCh37 ensembl ENSG00000012048
#> 29 -1 3 BRCA1-202 GRCh37 ensembl ENSG00000012048
#> 30 -1 3 BRCA1-203 GRCh37 ensembl ENSG00000012048
#> 31 -1 4 BRCA1-201 GRCh37 ensembl ENSG00000012048
#> seq_region_name Translation.Parent Translation.object_type Translation.id
#> 1 17 ENST00000357654 Translation ENSP00000350283
#> 2 17 ENST00000468300 Translation ENSP00000417148
#> 3 17 ENST00000586385 Translation ENSP00000465818
#> 4 17 ENST00000591534 Translation ENSP00000467329
#> 5 17 ENST00000591849 Translation ENSP00000465347
#> 6 17 ENST00000493795 Translation ENSP00000418775
#> 7 17 ENST00000471181 Translation ENSP00000418960
#> 8 17 ENST00000461221 Translation ENSP00000418548
#> 9 17 ENST00000491747 Translation ENSP00000420705
#> 10 17 ENST00000484087 Translation ENSP00000419481
#> 11 17 ENST00000478531 Translation ENSP00000420412
#> 12 17 ENST00000493919 Translation ENSP00000418819
#> 13 17 <NA> <NA> <NA>
#> 14 17 ENST00000487825 Translation ENSP00000418212
#> 15 17 ENST00000461574 Translation ENSP00000417241
#> 16 17 <NA> <NA> <NA>
#> 17 17 ENST00000412061 Translation ENSP00000397145
#> 18 17 ENST00000470026 Translation ENSP00000419274
#> 19 17 ENST00000477152 Translation ENSP00000419988
#> 20 17 ENST00000492859 Translation ENSP00000420253
#> 21 17 ENST00000497488 Translation ENSP00000418986
#> 22 17 ENST00000494123 Translation ENSP00000419103
#> 23 17 ENST00000473961 Translation ENSP00000420201
#> 24 17 ENST00000476777 Translation ENSP00000417554
#> 25 17 ENST00000461798 Translation ENSP00000417988
#> 26 17 ENST00000489037 Translation ENSP00000420781
#> 27 17 ENST00000354071 Translation ENSP00000326002
#> 28 17 ENST00000352993 Translation ENSP00000312236
#> 29 17 ENST00000346315 Translation ENSP00000246907
#> 30 17 ENST00000351666 Translation ENSP00000338007
#> 31 17 ENST00000309486 Translation ENSP00000310938
#> Translation.length Translation.end Translation.db_type Translation.start
#> 1 1863 41276113 core 41197695
#> 2 699 41276113 core 41197801
#> 3 173 41277202 core 41197695
#> 4 354 41226495 core 41197695
#> 5 96 41202109 core 41197695
#> 6 1816 41258543 core 41197695
#> 7 1884 41276113 core 41197695
#> 8 63 41276113 core 41256972
#> 9 759 41276113 core 41197695
#> 10 498 41256933 core 41215361
#> 11 623 41276113 core 41215361
#> 12 572 41258543 core 41215377
#> 13 NA NA <NA> NA
#> 14 266 41256933 core 41228505
#> 15 242 41243841 core 41228554
#> 16 NA NA <NA> NA
#> 17 437 41247883 core 41245587
#> 18 649 41276113 core 41245601
#> 19 622 41276113 core 41245603
#> 20 59 41276113 core 41262552
#> 21 177 41246659 core 41246129
#> 22 473 41276113 core 41246129
#> 23 319 41256908 core 41246187
#> 24 222 41276113 core 41247863
#> 25 63 41276113 core 41256972
#> 26 98 41276113 core 41256206
#> 27 1598 41276113 core 41197695
#> 28 721 41276113 core 41197695
#> 29 1624 41276113 core 41197695
#> 30 680 41276113 core 41197695
#> 31 1567 41246659 core 41197695
#> Translation.species Translation.version id
#> 1 human 3 ENST00000357654
#> 2 human 1 ENST00000468300
#> 3 human 1 ENST00000586385
#> 4 human 1 ENST00000591534
#> 5 human 1 ENST00000591849
#> 6 human 1 ENST00000493795
#> 7 human 2 ENST00000471181
#> 8 human 1 ENST00000461221
#> 9 human 2 ENST00000491747
#> 10 human 1 ENST00000484087
#> 11 human 1 ENST00000478531
#> 12 human 1 ENST00000493919
#> 13 <NA> NA ENST00000472490
#> 14 human 1 ENST00000487825
#> 15 human 1 ENST00000461574
#> 16 <NA> NA ENST00000467274
#> 17 human 3 ENST00000412061
#> 18 human 1 ENST00000470026
#> 19 human 1 ENST00000477152
#> 20 human 1 ENST00000492859
#> 21 human 1 ENST00000497488
#> 22 human 1 ENST00000494123
#> 23 human 1 ENST00000473961
#> 24 human 1 ENST00000476777
#> 25 human 1 ENST00000461798
#> 26 human 1 ENST00000489037
#> 27 human 6 ENST00000354071
#> 28 human 5 ENST00000352993
#> 29 human 4 ENST00000346315
#> 30 human 3 ENST00000351666
#> 31 human 4 ENST00000309486
#>
#> $db_type
#> [1] "core"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $seq_region_name
#> [1] "17"
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $version
#> [1] 15
#>
#> $strand
#> [1] -1
#>
#> $species
#> [1] "human"
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>