Query information from Ensembl
Usage
queryEnsemblByGene(gene, species = NULL, assembly = NULL)
queryEnsemblByEvent(event, species = NULL, assembly = NULL, data = NULL)See also
Other functions to retrieve external information:
ensemblToUniprot(),
plotProtein(),
plotTranscripts()
Examples
queryEnsemblByGene("BRCA1", "human", "hg19")
#> $object_type
#> [1] "Gene"
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $version
#> [1] 15
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $start
#> [1] 41196312
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $db_type
#> [1] "core"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $strand
#> [1] -1
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $species
#> [1] "human"
#>
#> $seq_region_name
#> [1] "17"
#>
#> $Transcript
#> start biotype length version Parent Exon
#> 1 41196312 protein_coding 7094 3 ENSG00000012048 c(-1, -1....
#> 2 41196822 protein_coding 3273 1 ENSG00000012048 c("ENSE0....
#> 3 41197580 protein_coding 781 1 ENSG00000012048 c(1, 1, ....
#> 4 41197580 protein_coding 1282 1 ENSG00000012048 c(-1, -1....
#> 5 41197580 protein_coding 563 1 ENSG00000012048 c(1, 1, ....
#> 6 41197646 protein_coding 5732 1 ENSG00000012048 c(1, 1, ....
#> 7 41197646 protein_coding 5936 2 ENSG00000012048 c(1, 1, ....
#> 8 41197695 nonsense_mediated_decay 5693 1 ENSG00000012048 c(412771....
#> 9 41197695 protein_coding 2379 2 ENSG00000012048 c("GRCh3....
#> 10 41215361 protein_coding 1495 1 ENSG00000012048 c("17", ....
#> 11 41215361 protein_coding 1972 1 ENSG00000012048 c(1, 1, ....
#> 12 41215377 protein_coding 1948 1 ENSG00000012048 c(1, 1, ....
#> 13 41219291 retained_intron 561 1 ENSG00000012048 c(1, 1),....
#> 14 41228505 protein_coding 800 1 ENSG00000012048 c("GRCh3....
#> 15 41228554 protein_coding 726 1 ENSG00000012048 c("GRCh3....
#> 16 41243115 retained_intron 4497 1 ENSG00000012048 c(-1, -1....
#> 17 41245587 non_stop_decay 1312 3 ENSG00000012048 c("GRCh3....
#> 18 41245601 protein_coding 2108 1 ENSG00000012048 c(1, 1, ....
#> 19 41245603 protein_coding 1980 1 ENSG00000012048 c(1, 1, ....
#> 20 41246129 nonsense_mediated_decay 1584 1 ENSG00000012048 c("human....
#> 21 41246129 protein_coding 779 1 ENSG00000012048 c(412772....
#> 22 41246129 protein_coding 1612 1 ENSG00000012048 c(412772....
#> 23 41246187 protein_coding 958 1 ENSG00000012048 c("GRCh3....
#> 24 41247863 protein_coding 769 1 ENSG00000012048 c("core"....
#> 25 41251848 nonsense_mediated_decay 582 1 ENSG00000012048 c(1, 1, ....
#> 26 41256206 protein_coding 455 1 ENSG00000012048 c(412771....
#> 27 41196313 protein_coding 6411 3 ENSG00000012048 c(1, 1, ....
#> 28 41196313 protein_coding 3780 3 ENSG00000012048 c(412772....
#> 29 41196313 protein_coding 6451 3 ENSG00000012048 c(1, 1, ....
#> 30 41196313 protein_coding 3444 3 ENSG00000012048 c(412760....
#> 31 41196313 protein_coding 7114 4 ENSG00000012048 c("GRCh3....
#> is_canonical display_name object_type Translation.species Translation.Parent
#> 1 0 BRCA1-001 Transcript human ENST00000357654
#> 2 0 BRCA1-007 Transcript human ENST00000468300
#> 3 0 BRCA1-023 Transcript human ENST00000586385
#> 4 0 BRCA1-024 Transcript human ENST00000591534
#> 5 0 BRCA1-025 Transcript human ENST00000591849
#> 6 0 BRCA1-006 Transcript human ENST00000493795
#> 7 1 BRCA1-005 Transcript human ENST00000471181
#> 8 0 BRCA1-010 Transcript human ENST00000461221
#> 9 0 BRCA1-014 Transcript human ENST00000491747
#> 10 0 BRCA1-015 Transcript human ENST00000484087
#> 11 0 BRCA1-009 Transcript human ENST00000478531
#> 12 0 BRCA1-008 Transcript human ENST00000493919
#> 13 0 BRCA1-021 Transcript <NA> <NA>
#> 14 0 BRCA1-019 Transcript human ENST00000487825
#> 15 0 BRCA1-022 Transcript human ENST00000461574
#> 16 0 BRCA1-012 Transcript <NA> <NA>
#> 17 0 BRCA1-026 Transcript human ENST00000412061
#> 18 0 BRCA1-011 Transcript human ENST00000470026
#> 19 0 BRCA1-004 Transcript human ENST00000477152
#> 20 0 BRCA1-002 Transcript human ENST00000492859
#> 21 0 BRCA1-003 Transcript human ENST00000497488
#> 22 0 BRCA1-013 Transcript human ENST00000494123
#> 23 0 BRCA1-018 Transcript human ENST00000473961
#> 24 0 BRCA1-017 Transcript human ENST00000476777
#> 25 0 BRCA1-020 Transcript human ENST00000461798
#> 26 0 BRCA1-016 Transcript human ENST00000489037
#> 27 0 BRCA1-205 Transcript human ENST00000354071
#> 28 0 BRCA1-204 Transcript human ENST00000352993
#> 29 0 BRCA1-202 Transcript human ENST00000346315
#> 30 0 BRCA1-203 Transcript human ENST00000351666
#> 31 0 BRCA1-201 Transcript human ENST00000309486
#> Translation.db_type Translation.object_type Translation.id
#> 1 core Translation ENSP00000350283
#> 2 core Translation ENSP00000417148
#> 3 core Translation ENSP00000465818
#> 4 core Translation ENSP00000467329
#> 5 core Translation ENSP00000465347
#> 6 core Translation ENSP00000418775
#> 7 core Translation ENSP00000418960
#> 8 core Translation ENSP00000418548
#> 9 core Translation ENSP00000420705
#> 10 core Translation ENSP00000419481
#> 11 core Translation ENSP00000420412
#> 12 core Translation ENSP00000418819
#> 13 <NA> <NA> <NA>
#> 14 core Translation ENSP00000418212
#> 15 core Translation ENSP00000417241
#> 16 <NA> <NA> <NA>
#> 17 core Translation ENSP00000397145
#> 18 core Translation ENSP00000419274
#> 19 core Translation ENSP00000419988
#> 20 core Translation ENSP00000420253
#> 21 core Translation ENSP00000418986
#> 22 core Translation ENSP00000419103
#> 23 core Translation ENSP00000420201
#> 24 core Translation ENSP00000417554
#> 25 core Translation ENSP00000417988
#> 26 core Translation ENSP00000420781
#> 27 core Translation ENSP00000326002
#> 28 core Translation ENSP00000312236
#> 29 core Translation ENSP00000246907
#> 30 core Translation ENSP00000338007
#> 31 core Translation ENSP00000310938
#> Translation.start Translation.end Translation.length Translation.version
#> 1 41197695 41276113 1863 3
#> 2 41197801 41276113 699 1
#> 3 41197695 41277202 173 1
#> 4 41197695 41226495 354 1
#> 5 41197695 41202109 96 1
#> 6 41197695 41258543 1816 1
#> 7 41197695 41276113 1884 2
#> 8 41256972 41276113 63 1
#> 9 41197695 41276113 759 2
#> 10 41215361 41256933 498 1
#> 11 41215361 41276113 623 1
#> 12 41215377 41258543 572 1
#> 13 NA NA NA NA
#> 14 41228505 41256933 266 1
#> 15 41228554 41243841 242 1
#> 16 NA NA NA NA
#> 17 41245587 41247883 437 3
#> 18 41245601 41276113 649 1
#> 19 41245603 41276113 622 1
#> 20 41262552 41276113 59 1
#> 21 41246129 41246659 177 1
#> 22 41246129 41276113 473 1
#> 23 41246187 41256908 319 1
#> 24 41247863 41276113 222 1
#> 25 41256972 41276113 63 1
#> 26 41256206 41276113 98 1
#> 27 41197695 41276113 1598 6
#> 28 41197695 41276113 721 5
#> 29 41197695 41276113 1624 4
#> 30 41197695 41276113 680 3
#> 31 41197695 41246659 1567 4
#> end source species seq_region_name assembly_name strand db_type
#> 1 41277387 ensembl_havana human 17 GRCh37 -1 core
#> 2 41277468 ensembl_havana human 17 GRCh37 -1 core
#> 3 41277346 havana human 17 GRCh37 -1 core
#> 4 41277346 havana human 17 GRCh37 -1 core
#> 5 41277346 havana human 17 GRCh37 -1 core
#> 6 41277419 ensembl_havana human 17 GRCh37 -1 core
#> 7 41277500 ensembl_havana human 17 GRCh37 -1 core
#> 8 41277305 havana human 17 GRCh37 -1 core
#> 9 41277373 havana human 17 GRCh37 -1 core
#> 10 41256933 havana human 17 GRCh37 -1 core
#> 11 41277376 havana human 17 GRCh37 -1 core
#> 12 41277419 havana human 17 GRCh37 -1 core
#> 13 41223083 havana human 17 GRCh37 -1 core
#> 14 41256933 havana human 17 GRCh37 -1 core
#> 15 41243841 havana human 17 GRCh37 -1 core
#> 16 41277332 havana human 17 GRCh37 -1 core
#> 17 41247883 havana human 17 GRCh37 -1 core
#> 18 41277340 havana human 17 GRCh37 -1 core
#> 19 41277381 havana human 17 GRCh37 -1 core
#> 20 41277317 havana human 17 GRCh37 -1 core
#> 21 41277317 havana human 17 GRCh37 -1 core
#> 22 41277467 havana human 17 GRCh37 -1 core
#> 23 41256908 havana human 17 GRCh37 -1 core
#> 24 41277370 havana human 17 GRCh37 -1 core
#> 25 41277387 havana human 17 GRCh37 -1 core
#> 26 41277338 havana human 17 GRCh37 -1 core
#> 27 41277500 ensembl human 17 GRCh37 -1 core
#> 28 41277500 ensembl human 17 GRCh37 -1 core
#> 29 41277468 ensembl human 17 GRCh37 -1 core
#> 30 41276132 ensembl human 17 GRCh37 -1 core
#> 31 41277468 ensembl human 17 GRCh37 -1 core
#> gencode_primary id logic_name
#> 1 0 ENST00000357654 ensembl_havana_transcript
#> 2 0 ENST00000468300 ensembl_havana_transcript
#> 3 0 ENST00000586385 havana_homo_sapiens_37
#> 4 0 ENST00000591534 havana_homo_sapiens_37
#> 5 0 ENST00000591849 havana_homo_sapiens_37
#> 6 0 ENST00000493795 ensembl_havana_transcript
#> 7 0 ENST00000471181 ensembl_havana_transcript
#> 8 0 ENST00000461221 havana_homo_sapiens_37
#> 9 0 ENST00000491747 havana_homo_sapiens_37
#> 10 0 ENST00000484087 havana_homo_sapiens_37
#> 11 0 ENST00000478531 havana_homo_sapiens_37
#> 12 0 ENST00000493919 havana_homo_sapiens_37
#> 13 0 ENST00000472490 havana_homo_sapiens_37
#> 14 0 ENST00000487825 havana_homo_sapiens_37
#> 15 0 ENST00000461574 havana_homo_sapiens_37
#> 16 0 ENST00000467274 havana_homo_sapiens_37
#> 17 0 ENST00000412061 havana_homo_sapiens_37
#> 18 0 ENST00000470026 havana_homo_sapiens_37
#> 19 0 ENST00000477152 havana_homo_sapiens_37
#> 20 0 ENST00000492859 havana_homo_sapiens_37
#> 21 0 ENST00000497488 havana_homo_sapiens_37
#> 22 0 ENST00000494123 havana_homo_sapiens_37
#> 23 0 ENST00000473961 havana_homo_sapiens_37
#> 24 0 ENST00000476777 havana_homo_sapiens_37
#> 25 0 ENST00000461798 havana_homo_sapiens_37
#> 26 0 ENST00000489037 havana_homo_sapiens_37
#> 27 0 ENST00000354071 ensembl_homo_sapiens_37
#> 28 0 ENST00000352993 ensembl_homo_sapiens_37
#> 29 0 ENST00000346315 ensembl_homo_sapiens_37
#> 30 0 ENST00000351666 ensembl_homo_sapiens_37
#> 31 0 ENST00000309486 ensembl_homo_sapiens_37
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $end
#> [1] 41277500
#>
#> $source
#> [1] "ensembl_havana"
#>
queryEnsemblByGene("ENSG00000139618")
#> $description
#> [1] "breast cancer 2, early onset [Source:HGNC Symbol;Acc:1101]"
#>
#> $Transcript
#> start source length gencode_primary Parent
#> 1 32889611 ensembl_havana 10930 0 ENSG00000139618
#> 2 32889642 havana 2011 0 ENSG00000139618
#> 3 32945108 havana 495 0 ENSG00000139618
#> 4 32953977 havana 842 0 ENSG00000139618
#> 5 32970946 havana 523 0 ENSG00000139618
#> 6 32889617 ensembl 10984 0 ENSG00000139618
#> biotype Translation.version Translation.id
#> 1 protein_coding 3 ENSP00000369497
#> 2 protein_coding 2 ENSP00000435699
#> 3 nonsense_mediated_decay 1 ENSP00000433168
#> 4 nonsense_mediated_decay 1 ENSP00000434898
#> 5 retained_intron NA <NA>
#> 6 protein_coding 1 ENSP00000439902
#> Translation.Parent Translation.db_type Translation.length Translation.species
#> 1 ENST00000380152 core 3418 homo_sapiens
#> 2 ENST00000530893 core 481 homo_sapiens
#> 3 ENST00000528762 core 64 homo_sapiens
#> 4 ENST00000470094 core 186 homo_sapiens
#> 5 <NA> <NA> NA <NA>
#> 6 ENST00000544455 core 3418 homo_sapiens
#> Translation.start Translation.end Translation.object_type display_name
#> 1 32890598 32972907 Translation BRCA2-001
#> 2 32899266 32907428 Translation BRCA2-003
#> 3 32945108 32950807 Translation BRCA2-005
#> 4 32953977 32970229 Translation BRCA2-002
#> 5 NA NA <NA> BRCA2-006
#> 6 32890598 32972907 Translation BRCA2-201
#> end object_type species Exon assembly_name db_type
#> 1 32973347 Transcript homo_sapiens c("Exon".... GRCh37 core
#> 2 32907428 Transcript homo_sapiens c(1, 1, .... GRCh37 core
#> 3 32953632 Transcript homo_sapiens c("GRCh3.... GRCh37 core
#> 4 32972409 Transcript homo_sapiens c("homo_.... GRCh37 core
#> 5 32972585 Transcript homo_sapiens c(1, 1),.... GRCh37 core
#> 6 32973805 Transcript homo_sapiens c("homo_.... GRCh37 core
#> is_canonical logic_name version strand seq_region_name
#> 1 0 ensembl_havana_transcript 3 1 13
#> 2 0 havana_homo_sapiens_37 2 1 13
#> 3 0 havana_homo_sapiens_37 1 1 13
#> 4 0 havana_homo_sapiens_37 1 1 13
#> 5 0 havana_homo_sapiens_37 1 1 13
#> 6 1 ensembl_homo_sapiens_37 1 1 13
#> id
#> 1 ENST00000380152
#> 2 ENST00000530893
#> 3 ENST00000528762
#> 4 ENST00000470094
#> 5 ENST00000533776
#> 6 ENST00000544455
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $db_type
#> [1] "core"
#>
#> $seq_region_name
#> [1] "13"
#>
#> $strand
#> [1] 1
#>
#> $version
#> [1] 10
#>
#> $id
#> [1] "ENSG00000139618"
#>
#> $display_name
#> [1] "BRCA2"
#>
#> $end
#> [1] 32973805
#>
#> $object_type
#> [1] "Gene"
#>
#> $species
#> [1] "homo_sapiens"
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $canonical_transcript
#> [1] "ENST00000544455.1"
#>
#> $start
#> [1] 32889611
#>
#> $source
#> [1] "ensembl_havana"
#>
event <- "SE_17_-_41251792_41249306_41249261_41246877_BRCA1"
queryEnsemblByEvent(event, species="human", assembly="hg19")
#> $biotype
#> [1] "protein_coding"
#>
#> $Transcript
#> biotype object_type Exon source strand
#> 1 protein_coding Transcript c("17", .... ensembl_havana -1
#> 2 protein_coding Transcript c("17", .... ensembl_havana -1
#> 3 protein_coding Transcript c(-1, -1.... havana -1
#> 4 protein_coding Transcript c("17", .... havana -1
#> 5 protein_coding Transcript c("17", .... havana -1
#> 6 protein_coding Transcript c(-1, -1.... ensembl_havana -1
#> 7 protein_coding Transcript c("human.... ensembl_havana -1
#> 8 nonsense_mediated_decay Transcript c("17", .... havana -1
#> 9 protein_coding Transcript c("GRCh3.... havana -1
#> 10 protein_coding Transcript c(1, 1, .... havana -1
#> 11 protein_coding Transcript c("Exon".... havana -1
#> 12 protein_coding Transcript c(-1, -1.... havana -1
#> 13 retained_intron Transcript c("human.... havana -1
#> 14 protein_coding Transcript c("17", .... havana -1
#> 15 protein_coding Transcript c(412434.... havana -1
#> 16 retained_intron Transcript c("Exon".... havana -1
#> 17 non_stop_decay Transcript c("Exon".... havana -1
#> 18 protein_coding Transcript c(412773.... havana -1
#> 19 protein_coding Transcript c(412773.... havana -1
#> 20 nonsense_mediated_decay Transcript c(-1, -1.... havana -1
#> 21 protein_coding Transcript c("GRCh3.... havana -1
#> 22 protein_coding Transcript c("human.... havana -1
#> 23 protein_coding Transcript c("17", .... havana -1
#> 24 protein_coding Transcript c(-1, -1.... havana -1
#> 25 nonsense_mediated_decay Transcript c(412773.... havana -1
#> 26 protein_coding Transcript c("Exon".... havana -1
#> 27 protein_coding Transcript c("Exon".... ensembl -1
#> 28 protein_coding Transcript c(-1, -1.... ensembl -1
#> 29 protein_coding Transcript c("Exon".... ensembl -1
#> 30 protein_coding Transcript c("human.... ensembl -1
#> 31 protein_coding Transcript c("Exon".... ensembl -1
#> id is_canonical logic_name seq_region_name
#> 1 ENST00000357654 0 ensembl_havana_transcript 17
#> 2 ENST00000468300 0 ensembl_havana_transcript 17
#> 3 ENST00000586385 0 havana_homo_sapiens_37 17
#> 4 ENST00000591534 0 havana_homo_sapiens_37 17
#> 5 ENST00000591849 0 havana_homo_sapiens_37 17
#> 6 ENST00000493795 0 ensembl_havana_transcript 17
#> 7 ENST00000471181 1 ensembl_havana_transcript 17
#> 8 ENST00000461221 0 havana_homo_sapiens_37 17
#> 9 ENST00000491747 0 havana_homo_sapiens_37 17
#> 10 ENST00000484087 0 havana_homo_sapiens_37 17
#> 11 ENST00000478531 0 havana_homo_sapiens_37 17
#> 12 ENST00000493919 0 havana_homo_sapiens_37 17
#> 13 ENST00000472490 0 havana_homo_sapiens_37 17
#> 14 ENST00000487825 0 havana_homo_sapiens_37 17
#> 15 ENST00000461574 0 havana_homo_sapiens_37 17
#> 16 ENST00000467274 0 havana_homo_sapiens_37 17
#> 17 ENST00000412061 0 havana_homo_sapiens_37 17
#> 18 ENST00000470026 0 havana_homo_sapiens_37 17
#> 19 ENST00000477152 0 havana_homo_sapiens_37 17
#> 20 ENST00000492859 0 havana_homo_sapiens_37 17
#> 21 ENST00000497488 0 havana_homo_sapiens_37 17
#> 22 ENST00000494123 0 havana_homo_sapiens_37 17
#> 23 ENST00000473961 0 havana_homo_sapiens_37 17
#> 24 ENST00000476777 0 havana_homo_sapiens_37 17
#> 25 ENST00000461798 0 havana_homo_sapiens_37 17
#> 26 ENST00000489037 0 havana_homo_sapiens_37 17
#> 27 ENST00000354071 0 ensembl_homo_sapiens_37 17
#> 28 ENST00000352993 0 ensembl_homo_sapiens_37 17
#> 29 ENST00000346315 0 ensembl_homo_sapiens_37 17
#> 30 ENST00000351666 0 ensembl_homo_sapiens_37 17
#> 31 ENST00000309486 0 ensembl_homo_sapiens_37 17
#> Parent species Translation.species Translation.object_type
#> 1 ENSG00000012048 human human Translation
#> 2 ENSG00000012048 human human Translation
#> 3 ENSG00000012048 human human Translation
#> 4 ENSG00000012048 human human Translation
#> 5 ENSG00000012048 human human Translation
#> 6 ENSG00000012048 human human Translation
#> 7 ENSG00000012048 human human Translation
#> 8 ENSG00000012048 human human Translation
#> 9 ENSG00000012048 human human Translation
#> 10 ENSG00000012048 human human Translation
#> 11 ENSG00000012048 human human Translation
#> 12 ENSG00000012048 human human Translation
#> 13 ENSG00000012048 human <NA> <NA>
#> 14 ENSG00000012048 human human Translation
#> 15 ENSG00000012048 human human Translation
#> 16 ENSG00000012048 human <NA> <NA>
#> 17 ENSG00000012048 human human Translation
#> 18 ENSG00000012048 human human Translation
#> 19 ENSG00000012048 human human Translation
#> 20 ENSG00000012048 human human Translation
#> 21 ENSG00000012048 human human Translation
#> 22 ENSG00000012048 human human Translation
#> 23 ENSG00000012048 human human Translation
#> 24 ENSG00000012048 human human Translation
#> 25 ENSG00000012048 human human Translation
#> 26 ENSG00000012048 human human Translation
#> 27 ENSG00000012048 human human Translation
#> 28 ENSG00000012048 human human Translation
#> 29 ENSG00000012048 human human Translation
#> 30 ENSG00000012048 human human Translation
#> 31 ENSG00000012048 human human Translation
#> Translation.Parent Translation.end Translation.db_type Translation.version
#> 1 ENST00000357654 41276113 core 3
#> 2 ENST00000468300 41276113 core 1
#> 3 ENST00000586385 41277202 core 1
#> 4 ENST00000591534 41226495 core 1
#> 5 ENST00000591849 41202109 core 1
#> 6 ENST00000493795 41258543 core 1
#> 7 ENST00000471181 41276113 core 2
#> 8 ENST00000461221 41276113 core 1
#> 9 ENST00000491747 41276113 core 2
#> 10 ENST00000484087 41256933 core 1
#> 11 ENST00000478531 41276113 core 1
#> 12 ENST00000493919 41258543 core 1
#> 13 <NA> NA <NA> NA
#> 14 ENST00000487825 41256933 core 1
#> 15 ENST00000461574 41243841 core 1
#> 16 <NA> NA <NA> NA
#> 17 ENST00000412061 41247883 core 3
#> 18 ENST00000470026 41276113 core 1
#> 19 ENST00000477152 41276113 core 1
#> 20 ENST00000492859 41276113 core 1
#> 21 ENST00000497488 41246659 core 1
#> 22 ENST00000494123 41276113 core 1
#> 23 ENST00000473961 41256908 core 1
#> 24 ENST00000476777 41276113 core 1
#> 25 ENST00000461798 41276113 core 1
#> 26 ENST00000489037 41276113 core 1
#> 27 ENST00000354071 41276113 core 6
#> 28 ENST00000352993 41276113 core 5
#> 29 ENST00000346315 41276113 core 4
#> 30 ENST00000351666 41276113 core 3
#> 31 ENST00000309486 41246659 core 4
#> Translation.id Translation.start Translation.length display_name
#> 1 ENSP00000350283 41197695 1863 BRCA1-001
#> 2 ENSP00000417148 41197801 699 BRCA1-007
#> 3 ENSP00000465818 41197695 173 BRCA1-023
#> 4 ENSP00000467329 41197695 354 BRCA1-024
#> 5 ENSP00000465347 41197695 96 BRCA1-025
#> 6 ENSP00000418775 41197695 1816 BRCA1-006
#> 7 ENSP00000418960 41197695 1884 BRCA1-005
#> 8 ENSP00000418548 41256972 63 BRCA1-010
#> 9 ENSP00000420705 41197695 759 BRCA1-014
#> 10 ENSP00000419481 41215361 498 BRCA1-015
#> 11 ENSP00000420412 41215361 623 BRCA1-009
#> 12 ENSP00000418819 41215377 572 BRCA1-008
#> 13 <NA> NA NA BRCA1-021
#> 14 ENSP00000418212 41228505 266 BRCA1-019
#> 15 ENSP00000417241 41228554 242 BRCA1-022
#> 16 <NA> NA NA BRCA1-012
#> 17 ENSP00000397145 41245587 437 BRCA1-026
#> 18 ENSP00000419274 41245601 649 BRCA1-011
#> 19 ENSP00000419988 41245603 622 BRCA1-004
#> 20 ENSP00000420253 41262552 59 BRCA1-002
#> 21 ENSP00000418986 41246129 177 BRCA1-003
#> 22 ENSP00000419103 41246129 473 BRCA1-013
#> 23 ENSP00000420201 41246187 319 BRCA1-018
#> 24 ENSP00000417554 41247863 222 BRCA1-017
#> 25 ENSP00000417988 41256972 63 BRCA1-020
#> 26 ENSP00000420781 41256206 98 BRCA1-016
#> 27 ENSP00000326002 41197695 1598 BRCA1-205
#> 28 ENSP00000312236 41197695 721 BRCA1-204
#> 29 ENSP00000246907 41197695 1624 BRCA1-202
#> 30 ENSP00000338007 41197695 680 BRCA1-203
#> 31 ENSP00000310938 41197695 1567 BRCA1-201
#> gencode_primary start length assembly_name version db_type end
#> 1 0 41196312 7094 GRCh37 3 core 41277387
#> 2 0 41196822 3273 GRCh37 1 core 41277468
#> 3 0 41197580 781 GRCh37 1 core 41277346
#> 4 0 41197580 1282 GRCh37 1 core 41277346
#> 5 0 41197580 563 GRCh37 1 core 41277346
#> 6 0 41197646 5732 GRCh37 1 core 41277419
#> 7 0 41197646 5936 GRCh37 2 core 41277500
#> 8 0 41197695 5693 GRCh37 1 core 41277305
#> 9 0 41197695 2379 GRCh37 2 core 41277373
#> 10 0 41215361 1495 GRCh37 1 core 41256933
#> 11 0 41215361 1972 GRCh37 1 core 41277376
#> 12 0 41215377 1948 GRCh37 1 core 41277419
#> 13 0 41219291 561 GRCh37 1 core 41223083
#> 14 0 41228505 800 GRCh37 1 core 41256933
#> 15 0 41228554 726 GRCh37 1 core 41243841
#> 16 0 41243115 4497 GRCh37 1 core 41277332
#> 17 0 41245587 1312 GRCh37 3 core 41247883
#> 18 0 41245601 2108 GRCh37 1 core 41277340
#> 19 0 41245603 1980 GRCh37 1 core 41277381
#> 20 0 41246129 1584 GRCh37 1 core 41277317
#> 21 0 41246129 779 GRCh37 1 core 41277317
#> 22 0 41246129 1612 GRCh37 1 core 41277467
#> 23 0 41246187 958 GRCh37 1 core 41256908
#> 24 0 41247863 769 GRCh37 1 core 41277370
#> 25 0 41251848 582 GRCh37 1 core 41277387
#> 26 0 41256206 455 GRCh37 1 core 41277338
#> 27 0 41196313 6411 GRCh37 3 core 41277500
#> 28 0 41196313 3780 GRCh37 3 core 41277500
#> 29 0 41196313 6451 GRCh37 3 core 41277468
#> 30 0 41196313 3444 GRCh37 3 core 41276132
#> 31 0 41196313 7114 GRCh37 4 core 41277468
#>
#> $object_type
#> [1] "Gene"
#>
#> $strand
#> [1] -1
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $seq_region_name
#> [1] "17"
#>
#> $species
#> [1] "human"
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $start
#> [1] 41196312
#>
#> $version
#> [1] 15
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $db_type
#> [1] "core"
#>
#> $end
#> [1] 41277500
#>