Query information from Ensembl
Usage
queryEnsemblByGene(gene, species = NULL, assembly = NULL)
queryEnsemblByEvent(event, species = NULL, assembly = NULL, data = NULL)See also
Other functions to retrieve external information:
ensemblToUniprot(),
plotProtein(),
plotTranscripts()
Examples
queryEnsemblByGene("BRCA1", "human", "hg19")
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $object_type
#> [1] "Gene"
#>
#> $seq_region_name
#> [1] "17"
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $db_type
#> [1] "core"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $strand
#> [1] -1
#>
#> $Transcript
#> db_type display_name logic_name strand source
#> 1 core BRCA1-001 ensembl_havana_transcript -1 ensembl_havana
#> 2 core BRCA1-007 ensembl_havana_transcript -1 ensembl_havana
#> 3 core BRCA1-023 havana_homo_sapiens_37 -1 havana
#> 4 core BRCA1-024 havana_homo_sapiens_37 -1 havana
#> 5 core BRCA1-025 havana_homo_sapiens_37 -1 havana
#> 6 core BRCA1-006 ensembl_havana_transcript -1 ensembl_havana
#> 7 core BRCA1-005 ensembl_havana_transcript -1 ensembl_havana
#> 8 core BRCA1-010 havana_homo_sapiens_37 -1 havana
#> 9 core BRCA1-014 havana_homo_sapiens_37 -1 havana
#> 10 core BRCA1-015 havana_homo_sapiens_37 -1 havana
#> 11 core BRCA1-009 havana_homo_sapiens_37 -1 havana
#> 12 core BRCA1-008 havana_homo_sapiens_37 -1 havana
#> 13 core BRCA1-021 havana_homo_sapiens_37 -1 havana
#> 14 core BRCA1-019 havana_homo_sapiens_37 -1 havana
#> 15 core BRCA1-022 havana_homo_sapiens_37 -1 havana
#> 16 core BRCA1-012 havana_homo_sapiens_37 -1 havana
#> 17 core BRCA1-026 havana_homo_sapiens_37 -1 havana
#> 18 core BRCA1-011 havana_homo_sapiens_37 -1 havana
#> 19 core BRCA1-004 havana_homo_sapiens_37 -1 havana
#> 20 core BRCA1-002 havana_homo_sapiens_37 -1 havana
#> 21 core BRCA1-003 havana_homo_sapiens_37 -1 havana
#> 22 core BRCA1-013 havana_homo_sapiens_37 -1 havana
#> 23 core BRCA1-018 havana_homo_sapiens_37 -1 havana
#> 24 core BRCA1-017 havana_homo_sapiens_37 -1 havana
#> 25 core BRCA1-020 havana_homo_sapiens_37 -1 havana
#> 26 core BRCA1-016 havana_homo_sapiens_37 -1 havana
#> 27 core BRCA1-205 ensembl_homo_sapiens_37 -1 ensembl
#> 28 core BRCA1-204 ensembl_homo_sapiens_37 -1 ensembl
#> 29 core BRCA1-202 ensembl_homo_sapiens_37 -1 ensembl
#> 30 core BRCA1-203 ensembl_homo_sapiens_37 -1 ensembl
#> 31 core BRCA1-201 ensembl_homo_sapiens_37 -1 ensembl
#> end biotype assembly_name is_canonical id
#> 1 41277387 protein_coding GRCh37 0 ENST00000357654
#> 2 41277468 protein_coding GRCh37 0 ENST00000468300
#> 3 41277346 protein_coding GRCh37 0 ENST00000586385
#> 4 41277346 protein_coding GRCh37 0 ENST00000591534
#> 5 41277346 protein_coding GRCh37 0 ENST00000591849
#> 6 41277419 protein_coding GRCh37 0 ENST00000493795
#> 7 41277500 protein_coding GRCh37 1 ENST00000471181
#> 8 41277305 nonsense_mediated_decay GRCh37 0 ENST00000461221
#> 9 41277373 protein_coding GRCh37 0 ENST00000491747
#> 10 41256933 protein_coding GRCh37 0 ENST00000484087
#> 11 41277376 protein_coding GRCh37 0 ENST00000478531
#> 12 41277419 protein_coding GRCh37 0 ENST00000493919
#> 13 41223083 retained_intron GRCh37 0 ENST00000472490
#> 14 41256933 protein_coding GRCh37 0 ENST00000487825
#> 15 41243841 protein_coding GRCh37 0 ENST00000461574
#> 16 41277332 retained_intron GRCh37 0 ENST00000467274
#> 17 41247883 non_stop_decay GRCh37 0 ENST00000412061
#> 18 41277340 protein_coding GRCh37 0 ENST00000470026
#> 19 41277381 protein_coding GRCh37 0 ENST00000477152
#> 20 41277317 nonsense_mediated_decay GRCh37 0 ENST00000492859
#> 21 41277317 protein_coding GRCh37 0 ENST00000497488
#> 22 41277467 protein_coding GRCh37 0 ENST00000494123
#> 23 41256908 protein_coding GRCh37 0 ENST00000473961
#> 24 41277370 protein_coding GRCh37 0 ENST00000476777
#> 25 41277387 nonsense_mediated_decay GRCh37 0 ENST00000461798
#> 26 41277338 protein_coding GRCh37 0 ENST00000489037
#> 27 41277500 protein_coding GRCh37 0 ENST00000354071
#> 28 41277500 protein_coding GRCh37 0 ENST00000352993
#> 29 41277468 protein_coding GRCh37 0 ENST00000346315
#> 30 41276132 protein_coding GRCh37 0 ENST00000351666
#> 31 41277468 protein_coding GRCh37 0 ENST00000309486
#> gencode_primary version species start object_type Exon
#> 1 0 3 human 41196312 Transcript c("17", ....
#> 2 0 1 human 41196822 Transcript c("17", ....
#> 3 0 1 human 41197580 Transcript c("Exon"....
#> 4 0 1 human 41197580 Transcript c("GRCh3....
#> 5 0 1 human 41197580 Transcript c("17", ....
#> 6 0 1 human 41197646 Transcript c("Exon"....
#> 7 0 2 human 41197646 Transcript c(-1, -1....
#> 8 0 1 human 41197695 Transcript c("Exon"....
#> 9 0 2 human 41197695 Transcript c(1, 1, ....
#> 10 0 1 human 41215361 Transcript c("GRCh3....
#> 11 0 1 human 41215361 Transcript c("GRCh3....
#> 12 0 1 human 41215377 Transcript c("ENSE0....
#> 13 0 1 human 41219291 Transcript c("17", ....
#> 14 0 1 human 41228505 Transcript c("ENSE0....
#> 15 0 1 human 41228554 Transcript c(-1, -1....
#> 16 0 1 human 41243115 Transcript c("core"....
#> 17 0 3 human 41245587 Transcript c("core"....
#> 18 0 1 human 41245601 Transcript c("core"....
#> 19 0 1 human 41245603 Transcript c("core"....
#> 20 0 1 human 41246129 Transcript c("Exon"....
#> 21 0 1 human 41246129 Transcript c("core"....
#> 22 0 1 human 41246129 Transcript c(1, 1, ....
#> 23 0 1 human 41246187 Transcript c("human....
#> 24 0 1 human 41247863 Transcript c("human....
#> 25 0 1 human 41251848 Transcript c("core"....
#> 26 0 1 human 41256206 Transcript c("ENSE0....
#> 27 0 3 human 41196313 Transcript c("core"....
#> 28 0 3 human 41196313 Transcript c("GRCh3....
#> 29 0 3 human 41196313 Transcript c(-1, -1....
#> 30 0 3 human 41196313 Transcript c("human....
#> 31 0 4 human 41196313 Transcript c(412774....
#> Translation.object_type Translation.db_type Translation.id
#> 1 Translation core ENSP00000350283
#> 2 Translation core ENSP00000417148
#> 3 Translation core ENSP00000465818
#> 4 Translation core ENSP00000467329
#> 5 Translation core ENSP00000465347
#> 6 Translation core ENSP00000418775
#> 7 Translation core ENSP00000418960
#> 8 Translation core ENSP00000418548
#> 9 Translation core ENSP00000420705
#> 10 Translation core ENSP00000419481
#> 11 Translation core ENSP00000420412
#> 12 Translation core ENSP00000418819
#> 13 <NA> <NA> <NA>
#> 14 Translation core ENSP00000418212
#> 15 Translation core ENSP00000417241
#> 16 <NA> <NA> <NA>
#> 17 Translation core ENSP00000397145
#> 18 Translation core ENSP00000419274
#> 19 Translation core ENSP00000419988
#> 20 Translation core ENSP00000420253
#> 21 Translation core ENSP00000418986
#> 22 Translation core ENSP00000419103
#> 23 Translation core ENSP00000420201
#> 24 Translation core ENSP00000417554
#> 25 Translation core ENSP00000417988
#> 26 Translation core ENSP00000420781
#> 27 Translation core ENSP00000326002
#> 28 Translation core ENSP00000312236
#> 29 Translation core ENSP00000246907
#> 30 Translation core ENSP00000338007
#> 31 Translation core ENSP00000310938
#> Translation.species Translation.start Translation.version Translation.length
#> 1 human 41197695 3 1863
#> 2 human 41197801 1 699
#> 3 human 41197695 1 173
#> 4 human 41197695 1 354
#> 5 human 41197695 1 96
#> 6 human 41197695 1 1816
#> 7 human 41197695 2 1884
#> 8 human 41256972 1 63
#> 9 human 41197695 2 759
#> 10 human 41215361 1 498
#> 11 human 41215361 1 623
#> 12 human 41215377 1 572
#> 13 <NA> NA NA NA
#> 14 human 41228505 1 266
#> 15 human 41228554 1 242
#> 16 <NA> NA NA NA
#> 17 human 41245587 3 437
#> 18 human 41245601 1 649
#> 19 human 41245603 1 622
#> 20 human 41262552 1 59
#> 21 human 41246129 1 177
#> 22 human 41246129 1 473
#> 23 human 41246187 1 319
#> 24 human 41247863 1 222
#> 25 human 41256972 1 63
#> 26 human 41256206 1 98
#> 27 human 41197695 6 1598
#> 28 human 41197695 5 721
#> 29 human 41197695 4 1624
#> 30 human 41197695 3 680
#> 31 human 41197695 4 1567
#> Translation.Parent Translation.end seq_region_name Parent length
#> 1 ENST00000357654 41276113 17 ENSG00000012048 7094
#> 2 ENST00000468300 41276113 17 ENSG00000012048 3273
#> 3 ENST00000586385 41277202 17 ENSG00000012048 781
#> 4 ENST00000591534 41226495 17 ENSG00000012048 1282
#> 5 ENST00000591849 41202109 17 ENSG00000012048 563
#> 6 ENST00000493795 41258543 17 ENSG00000012048 5732
#> 7 ENST00000471181 41276113 17 ENSG00000012048 5936
#> 8 ENST00000461221 41276113 17 ENSG00000012048 5693
#> 9 ENST00000491747 41276113 17 ENSG00000012048 2379
#> 10 ENST00000484087 41256933 17 ENSG00000012048 1495
#> 11 ENST00000478531 41276113 17 ENSG00000012048 1972
#> 12 ENST00000493919 41258543 17 ENSG00000012048 1948
#> 13 <NA> NA 17 ENSG00000012048 561
#> 14 ENST00000487825 41256933 17 ENSG00000012048 800
#> 15 ENST00000461574 41243841 17 ENSG00000012048 726
#> 16 <NA> NA 17 ENSG00000012048 4497
#> 17 ENST00000412061 41247883 17 ENSG00000012048 1312
#> 18 ENST00000470026 41276113 17 ENSG00000012048 2108
#> 19 ENST00000477152 41276113 17 ENSG00000012048 1980
#> 20 ENST00000492859 41276113 17 ENSG00000012048 1584
#> 21 ENST00000497488 41246659 17 ENSG00000012048 779
#> 22 ENST00000494123 41276113 17 ENSG00000012048 1612
#> 23 ENST00000473961 41256908 17 ENSG00000012048 958
#> 24 ENST00000476777 41276113 17 ENSG00000012048 769
#> 25 ENST00000461798 41276113 17 ENSG00000012048 582
#> 26 ENST00000489037 41276113 17 ENSG00000012048 455
#> 27 ENST00000354071 41276113 17 ENSG00000012048 6411
#> 28 ENST00000352993 41276113 17 ENSG00000012048 3780
#> 29 ENST00000346315 41276113 17 ENSG00000012048 6451
#> 30 ENST00000351666 41276113 17 ENSG00000012048 3444
#> 31 ENST00000309486 41246659 17 ENSG00000012048 7114
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $end
#> [1] 41277500
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $species
#> [1] "human"
#>
#> $version
#> [1] 15
#>
#> $start
#> [1] 41196312
#>
queryEnsemblByGene("ENSG00000139618")
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $canonical_transcript
#> [1] "ENST00000544455.1"
#>
#> $db_type
#> [1] "core"
#>
#> $id
#> [1] "ENSG00000139618"
#>
#> $start
#> [1] 32889611
#>
#> $species
#> [1] "homo_sapiens"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $strand
#> [1] 1
#>
#> $Transcript
#> logic_name gencode_primary length id db_type
#> 1 ensembl_havana_transcript 0 10930 ENST00000380152 core
#> 2 havana_homo_sapiens_37 0 2011 ENST00000530893 core
#> 3 havana_homo_sapiens_37 0 495 ENST00000528762 core
#> 4 havana_homo_sapiens_37 0 842 ENST00000470094 core
#> 5 havana_homo_sapiens_37 0 523 ENST00000533776 core
#> 6 ensembl_homo_sapiens_37 0 10984 ENST00000544455 core
#> species start Exon Parent source strand
#> 1 homo_sapiens 32889611 c("GRCh3.... ENSG00000139618 ensembl_havana 1
#> 2 homo_sapiens 32889642 c(328896.... ENSG00000139618 havana 1
#> 3 homo_sapiens 32945108 c(329452.... ENSG00000139618 havana 1
#> 4 homo_sapiens 32953977 c(329540.... ENSG00000139618 havana 1
#> 5 homo_sapiens 32970946 c(1, 1),.... ENSG00000139618 havana 1
#> 6 homo_sapiens 32889617 c("Exon".... ENSG00000139618 ensembl 1
#> assembly_name Translation.species Translation.object_type Translation.start
#> 1 GRCh37 homo_sapiens Translation 32890598
#> 2 GRCh37 homo_sapiens Translation 32899266
#> 3 GRCh37 homo_sapiens Translation 32945108
#> 4 GRCh37 homo_sapiens Translation 32953977
#> 5 GRCh37 <NA> <NA> NA
#> 6 GRCh37 homo_sapiens Translation 32890598
#> Translation.version Translation.end Translation.Parent Translation.length
#> 1 3 32972907 ENST00000380152 3418
#> 2 2 32907428 ENST00000530893 481
#> 3 1 32950807 ENST00000528762 64
#> 4 1 32970229 ENST00000470094 186
#> 5 NA NA <NA> NA
#> 6 1 32972907 ENST00000544455 3418
#> Translation.id Translation.db_type seq_region_name is_canonical object_type
#> 1 ENSP00000369497 core 13 0 Transcript
#> 2 ENSP00000435699 core 13 0 Transcript
#> 3 ENSP00000433168 core 13 0 Transcript
#> 4 ENSP00000434898 core 13 0 Transcript
#> 5 <NA> <NA> 13 0 Transcript
#> 6 ENSP00000439902 core 13 1 Transcript
#> display_name version biotype end
#> 1 BRCA2-001 3 protein_coding 32973347
#> 2 BRCA2-003 2 protein_coding 32907428
#> 3 BRCA2-005 1 nonsense_mediated_decay 32953632
#> 4 BRCA2-002 1 nonsense_mediated_decay 32972409
#> 5 BRCA2-006 1 retained_intron 32972585
#> 6 BRCA2-201 1 protein_coding 32973805
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $seq_region_name
#> [1] "13"
#>
#> $object_type
#> [1] "Gene"
#>
#> $display_name
#> [1] "BRCA2"
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $end
#> [1] 32973805
#>
#> $description
#> [1] "breast cancer 2, early onset [Source:HGNC Symbol;Acc:1101]"
#>
#> $version
#> [1] 10
#>
event <- "SE_17_-_41251792_41249306_41249261_41246877_BRCA1"
queryEnsemblByEvent(event, species="human", assembly="hg19")
#> $Transcript
#> species seq_region_name id db_type is_canonical
#> 1 human 17 ENST00000357654 core 0
#> 2 human 17 ENST00000468300 core 0
#> 3 human 17 ENST00000586385 core 0
#> 4 human 17 ENST00000591534 core 0
#> 5 human 17 ENST00000591849 core 0
#> 6 human 17 ENST00000493795 core 0
#> 7 human 17 ENST00000471181 core 1
#> 8 human 17 ENST00000461221 core 0
#> 9 human 17 ENST00000491747 core 0
#> 10 human 17 ENST00000484087 core 0
#> 11 human 17 ENST00000478531 core 0
#> 12 human 17 ENST00000493919 core 0
#> 13 human 17 ENST00000472490 core 0
#> 14 human 17 ENST00000487825 core 0
#> 15 human 17 ENST00000461574 core 0
#> 16 human 17 ENST00000467274 core 0
#> 17 human 17 ENST00000412061 core 0
#> 18 human 17 ENST00000470026 core 0
#> 19 human 17 ENST00000477152 core 0
#> 20 human 17 ENST00000492859 core 0
#> 21 human 17 ENST00000497488 core 0
#> 22 human 17 ENST00000494123 core 0
#> 23 human 17 ENST00000473961 core 0
#> 24 human 17 ENST00000476777 core 0
#> 25 human 17 ENST00000461798 core 0
#> 26 human 17 ENST00000489037 core 0
#> 27 human 17 ENST00000354071 core 0
#> 28 human 17 ENST00000352993 core 0
#> 29 human 17 ENST00000346315 core 0
#> 30 human 17 ENST00000351666 core 0
#> 31 human 17 ENST00000309486 core 0
#> logic_name version source gencode_primary strand
#> 1 ensembl_havana_transcript 3 ensembl_havana 0 -1
#> 2 ensembl_havana_transcript 1 ensembl_havana 0 -1
#> 3 havana_homo_sapiens_37 1 havana 0 -1
#> 4 havana_homo_sapiens_37 1 havana 0 -1
#> 5 havana_homo_sapiens_37 1 havana 0 -1
#> 6 ensembl_havana_transcript 1 ensembl_havana 0 -1
#> 7 ensembl_havana_transcript 2 ensembl_havana 0 -1
#> 8 havana_homo_sapiens_37 1 havana 0 -1
#> 9 havana_homo_sapiens_37 2 havana 0 -1
#> 10 havana_homo_sapiens_37 1 havana 0 -1
#> 11 havana_homo_sapiens_37 1 havana 0 -1
#> 12 havana_homo_sapiens_37 1 havana 0 -1
#> 13 havana_homo_sapiens_37 1 havana 0 -1
#> 14 havana_homo_sapiens_37 1 havana 0 -1
#> 15 havana_homo_sapiens_37 1 havana 0 -1
#> 16 havana_homo_sapiens_37 1 havana 0 -1
#> 17 havana_homo_sapiens_37 3 havana 0 -1
#> 18 havana_homo_sapiens_37 1 havana 0 -1
#> 19 havana_homo_sapiens_37 1 havana 0 -1
#> 20 havana_homo_sapiens_37 1 havana 0 -1
#> 21 havana_homo_sapiens_37 1 havana 0 -1
#> 22 havana_homo_sapiens_37 1 havana 0 -1
#> 23 havana_homo_sapiens_37 1 havana 0 -1
#> 24 havana_homo_sapiens_37 1 havana 0 -1
#> 25 havana_homo_sapiens_37 1 havana 0 -1
#> 26 havana_homo_sapiens_37 1 havana 0 -1
#> 27 ensembl_homo_sapiens_37 3 ensembl 0 -1
#> 28 ensembl_homo_sapiens_37 3 ensembl 0 -1
#> 29 ensembl_homo_sapiens_37 3 ensembl 0 -1
#> 30 ensembl_homo_sapiens_37 3 ensembl 0 -1
#> 31 ensembl_homo_sapiens_37 4 ensembl 0 -1
#> Exon display_name Translation.db_type Translation.id
#> 1 c("ENSE0.... BRCA1-001 core ENSP00000350283
#> 2 c("GRCh3.... BRCA1-007 core ENSP00000417148
#> 3 c("human.... BRCA1-023 core ENSP00000465818
#> 4 c("GRCh3.... BRCA1-024 core ENSP00000467329
#> 5 c("GRCh3.... BRCA1-025 core ENSP00000465347
#> 6 c(1, 1, .... BRCA1-006 core ENSP00000418775
#> 7 c("17", .... BRCA1-005 core ENSP00000418960
#> 8 c("17", .... BRCA1-010 core ENSP00000418548
#> 9 c(-1, -1.... BRCA1-014 core ENSP00000420705
#> 10 c("ENSE0.... BRCA1-015 core ENSP00000419481
#> 11 c("GRCh3.... BRCA1-009 core ENSP00000420412
#> 12 c("core".... BRCA1-008 core ENSP00000418819
#> 13 c(-1, -1.... BRCA1-021 <NA> <NA>
#> 14 c(412569.... BRCA1-019 core ENSP00000418212
#> 15 c("core".... BRCA1-022 core ENSP00000417241
#> 16 c("GRCh3.... BRCA1-012 <NA> <NA>
#> 17 c(412478.... BRCA1-026 core ENSP00000397145
#> 18 c(1, 1, .... BRCA1-011 core ENSP00000419274
#> 19 c("GRCh3.... BRCA1-004 core ENSP00000419988
#> 20 c("GRCh3.... BRCA1-002 core ENSP00000420253
#> 21 c("17", .... BRCA1-003 core ENSP00000418986
#> 22 c(-1, -1.... BRCA1-013 core ENSP00000419103
#> 23 c("GRCh3.... BRCA1-018 core ENSP00000420201
#> 24 c(412772.... BRCA1-017 core ENSP00000417554
#> 25 c("ENSE0.... BRCA1-020 core ENSP00000417988
#> 26 c("GRCh3.... BRCA1-016 core ENSP00000420781
#> 27 c("human.... BRCA1-205 core ENSP00000326002
#> 28 c("ENSE0.... BRCA1-204 core ENSP00000312236
#> 29 c(412772.... BRCA1-202 core ENSP00000246907
#> 30 c("core".... BRCA1-203 core ENSP00000338007
#> 31 c("GRCh3.... BRCA1-201 core ENSP00000310938
#> Translation.species Translation.version Translation.start Translation.length
#> 1 human 3 41197695 1863
#> 2 human 1 41197801 699
#> 3 human 1 41197695 173
#> 4 human 1 41197695 354
#> 5 human 1 41197695 96
#> 6 human 1 41197695 1816
#> 7 human 2 41197695 1884
#> 8 human 1 41256972 63
#> 9 human 2 41197695 759
#> 10 human 1 41215361 498
#> 11 human 1 41215361 623
#> 12 human 1 41215377 572
#> 13 <NA> NA NA NA
#> 14 human 1 41228505 266
#> 15 human 1 41228554 242
#> 16 <NA> NA NA NA
#> 17 human 3 41245587 437
#> 18 human 1 41245601 649
#> 19 human 1 41245603 622
#> 20 human 1 41262552 59
#> 21 human 1 41246129 177
#> 22 human 1 41246129 473
#> 23 human 1 41246187 319
#> 24 human 1 41247863 222
#> 25 human 1 41256972 63
#> 26 human 1 41256206 98
#> 27 human 6 41197695 1598
#> 28 human 5 41197695 721
#> 29 human 4 41197695 1624
#> 30 human 3 41197695 680
#> 31 human 4 41197695 1567
#> Translation.Parent Translation.object_type Translation.end assembly_name
#> 1 ENST00000357654 Translation 41276113 GRCh37
#> 2 ENST00000468300 Translation 41276113 GRCh37
#> 3 ENST00000586385 Translation 41277202 GRCh37
#> 4 ENST00000591534 Translation 41226495 GRCh37
#> 5 ENST00000591849 Translation 41202109 GRCh37
#> 6 ENST00000493795 Translation 41258543 GRCh37
#> 7 ENST00000471181 Translation 41276113 GRCh37
#> 8 ENST00000461221 Translation 41276113 GRCh37
#> 9 ENST00000491747 Translation 41276113 GRCh37
#> 10 ENST00000484087 Translation 41256933 GRCh37
#> 11 ENST00000478531 Translation 41276113 GRCh37
#> 12 ENST00000493919 Translation 41258543 GRCh37
#> 13 <NA> <NA> NA GRCh37
#> 14 ENST00000487825 Translation 41256933 GRCh37
#> 15 ENST00000461574 Translation 41243841 GRCh37
#> 16 <NA> <NA> NA GRCh37
#> 17 ENST00000412061 Translation 41247883 GRCh37
#> 18 ENST00000470026 Translation 41276113 GRCh37
#> 19 ENST00000477152 Translation 41276113 GRCh37
#> 20 ENST00000492859 Translation 41276113 GRCh37
#> 21 ENST00000497488 Translation 41246659 GRCh37
#> 22 ENST00000494123 Translation 41276113 GRCh37
#> 23 ENST00000473961 Translation 41256908 GRCh37
#> 24 ENST00000476777 Translation 41276113 GRCh37
#> 25 ENST00000461798 Translation 41276113 GRCh37
#> 26 ENST00000489037 Translation 41276113 GRCh37
#> 27 ENST00000354071 Translation 41276113 GRCh37
#> 28 ENST00000352993 Translation 41276113 GRCh37
#> 29 ENST00000346315 Translation 41276113 GRCh37
#> 30 ENST00000351666 Translation 41276113 GRCh37
#> 31 ENST00000309486 Translation 41246659 GRCh37
#> biotype end object_type Parent length start
#> 1 protein_coding 41277387 Transcript ENSG00000012048 7094 41196312
#> 2 protein_coding 41277468 Transcript ENSG00000012048 3273 41196822
#> 3 protein_coding 41277346 Transcript ENSG00000012048 781 41197580
#> 4 protein_coding 41277346 Transcript ENSG00000012048 1282 41197580
#> 5 protein_coding 41277346 Transcript ENSG00000012048 563 41197580
#> 6 protein_coding 41277419 Transcript ENSG00000012048 5732 41197646
#> 7 protein_coding 41277500 Transcript ENSG00000012048 5936 41197646
#> 8 nonsense_mediated_decay 41277305 Transcript ENSG00000012048 5693 41197695
#> 9 protein_coding 41277373 Transcript ENSG00000012048 2379 41197695
#> 10 protein_coding 41256933 Transcript ENSG00000012048 1495 41215361
#> 11 protein_coding 41277376 Transcript ENSG00000012048 1972 41215361
#> 12 protein_coding 41277419 Transcript ENSG00000012048 1948 41215377
#> 13 retained_intron 41223083 Transcript ENSG00000012048 561 41219291
#> 14 protein_coding 41256933 Transcript ENSG00000012048 800 41228505
#> 15 protein_coding 41243841 Transcript ENSG00000012048 726 41228554
#> 16 retained_intron 41277332 Transcript ENSG00000012048 4497 41243115
#> 17 non_stop_decay 41247883 Transcript ENSG00000012048 1312 41245587
#> 18 protein_coding 41277340 Transcript ENSG00000012048 2108 41245601
#> 19 protein_coding 41277381 Transcript ENSG00000012048 1980 41245603
#> 20 nonsense_mediated_decay 41277317 Transcript ENSG00000012048 1584 41246129
#> 21 protein_coding 41277317 Transcript ENSG00000012048 779 41246129
#> 22 protein_coding 41277467 Transcript ENSG00000012048 1612 41246129
#> 23 protein_coding 41256908 Transcript ENSG00000012048 958 41246187
#> 24 protein_coding 41277370 Transcript ENSG00000012048 769 41247863
#> 25 nonsense_mediated_decay 41277387 Transcript ENSG00000012048 582 41251848
#> 26 protein_coding 41277338 Transcript ENSG00000012048 455 41256206
#> 27 protein_coding 41277500 Transcript ENSG00000012048 6411 41196313
#> 28 protein_coding 41277500 Transcript ENSG00000012048 3780 41196313
#> 29 protein_coding 41277468 Transcript ENSG00000012048 6451 41196313
#> 30 protein_coding 41276132 Transcript ENSG00000012048 3444 41196313
#> 31 protein_coding 41277468 Transcript ENSG00000012048 7114 41196313
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $object_type
#> [1] "Gene"
#>
#> $end
#> [1] 41277500
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $start
#> [1] 41196312
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $strand
#> [1] -1
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $version
#> [1] 15
#>
#> $seq_region_name
#> [1] "17"
#>
#> $species
#> [1] "human"
#>
#> $db_type
#> [1] "core"
#>
#> $id
#> [1] "ENSG00000012048"
#>