Query information from Ensembl
Usage
queryEnsemblByGene(gene, species = NULL, assembly = NULL)
queryEnsemblByEvent(event, species = NULL, assembly = NULL, data = NULL)See also
Other functions to retrieve external information:
ensemblToUniprot(),
plotProtein(),
plotTranscripts()
Examples
queryEnsemblByGene("BRCA1", "human", "hg19")
#> $id
#> [1] "ENSG00000012048"
#>
#> $seq_region_name
#> [1] "17"
#>
#> $Transcript
#> version gencode_primary display_name start db_type Exon
#> 1 3 0 BRCA1-001 41196312 core c("ENSE0....
#> 2 1 0 BRCA1-007 41196822 core c("ENSE0....
#> 3 1 0 BRCA1-023 41197580 core c(412771....
#> 4 1 0 BRCA1-024 41197580 core c(1, 1, ....
#> 5 1 0 BRCA1-025 41197580 core c(1, 1, ....
#> 6 1 0 BRCA1-006 41197646 core c(412774....
#> 7 2 0 BRCA1-005 41197646 core c("human....
#> 8 1 0 BRCA1-010 41197695 core c("ENSE0....
#> 9 2 0 BRCA1-014 41197695 core c("17", ....
#> 10 1 0 BRCA1-015 41215361 core c("core"....
#> 11 1 0 BRCA1-009 41215361 core c(412772....
#> 12 1 0 BRCA1-008 41215377 core c(412774....
#> 13 1 0 BRCA1-021 41219291 core c(1, 1),....
#> 14 1 0 BRCA1-019 41228505 core c(-1, -1....
#> 15 1 0 BRCA1-022 41228554 core c("GRCh3....
#> 16 1 0 BRCA1-012 41243115 core c("human....
#> 17 3 0 BRCA1-026 41245587 core c(1, 1),....
#> 18 1 0 BRCA1-011 41245601 core c("human....
#> 19 1 0 BRCA1-004 41245603 core c("GRCh3....
#> 20 1 0 BRCA1-002 41246129 core c("Exon"....
#> 21 1 0 BRCA1-003 41246129 core c("core"....
#> 22 1 0 BRCA1-013 41246129 core c("human....
#> 23 1 0 BRCA1-018 41246187 core c("ENSE0....
#> 24 1 0 BRCA1-017 41247863 core c(412772....
#> 25 1 0 BRCA1-020 41251848 core c("GRCh3....
#> 26 1 0 BRCA1-016 41256206 core c(1, 1, ....
#> 27 3 0 BRCA1-205 41196313 core c("human....
#> 28 3 0 BRCA1-204 41196313 core c(1, 1, ....
#> 29 3 0 BRCA1-202 41196313 core c(412772....
#> 30 3 0 BRCA1-203 41196313 core c("core"....
#> 31 4 0 BRCA1-201 41196313 core c("core"....
#> biotype length seq_region_name id
#> 1 protein_coding 7094 17 ENST00000357654
#> 2 protein_coding 3273 17 ENST00000468300
#> 3 protein_coding 781 17 ENST00000586385
#> 4 protein_coding 1282 17 ENST00000591534
#> 5 protein_coding 563 17 ENST00000591849
#> 6 protein_coding 5732 17 ENST00000493795
#> 7 protein_coding 5936 17 ENST00000471181
#> 8 nonsense_mediated_decay 5693 17 ENST00000461221
#> 9 protein_coding 2379 17 ENST00000491747
#> 10 protein_coding 1495 17 ENST00000484087
#> 11 protein_coding 1972 17 ENST00000478531
#> 12 protein_coding 1948 17 ENST00000493919
#> 13 retained_intron 561 17 ENST00000472490
#> 14 protein_coding 800 17 ENST00000487825
#> 15 protein_coding 726 17 ENST00000461574
#> 16 retained_intron 4497 17 ENST00000467274
#> 17 non_stop_decay 1312 17 ENST00000412061
#> 18 protein_coding 2108 17 ENST00000470026
#> 19 protein_coding 1980 17 ENST00000477152
#> 20 nonsense_mediated_decay 1584 17 ENST00000492859
#> 21 protein_coding 779 17 ENST00000497488
#> 22 protein_coding 1612 17 ENST00000494123
#> 23 protein_coding 958 17 ENST00000473961
#> 24 protein_coding 769 17 ENST00000476777
#> 25 nonsense_mediated_decay 582 17 ENST00000461798
#> 26 protein_coding 455 17 ENST00000489037
#> 27 protein_coding 6411 17 ENST00000354071
#> 28 protein_coding 3780 17 ENST00000352993
#> 29 protein_coding 6451 17 ENST00000346315
#> 30 protein_coding 3444 17 ENST00000351666
#> 31 protein_coding 7114 17 ENST00000309486
#> Parent object_type strand Translation.start Translation.Parent
#> 1 ENSG00000012048 Transcript -1 41197695 ENST00000357654
#> 2 ENSG00000012048 Transcript -1 41197801 ENST00000468300
#> 3 ENSG00000012048 Transcript -1 41197695 ENST00000586385
#> 4 ENSG00000012048 Transcript -1 41197695 ENST00000591534
#> 5 ENSG00000012048 Transcript -1 41197695 ENST00000591849
#> 6 ENSG00000012048 Transcript -1 41197695 ENST00000493795
#> 7 ENSG00000012048 Transcript -1 41197695 ENST00000471181
#> 8 ENSG00000012048 Transcript -1 41256972 ENST00000461221
#> 9 ENSG00000012048 Transcript -1 41197695 ENST00000491747
#> 10 ENSG00000012048 Transcript -1 41215361 ENST00000484087
#> 11 ENSG00000012048 Transcript -1 41215361 ENST00000478531
#> 12 ENSG00000012048 Transcript -1 41215377 ENST00000493919
#> 13 ENSG00000012048 Transcript -1 NA <NA>
#> 14 ENSG00000012048 Transcript -1 41228505 ENST00000487825
#> 15 ENSG00000012048 Transcript -1 41228554 ENST00000461574
#> 16 ENSG00000012048 Transcript -1 NA <NA>
#> 17 ENSG00000012048 Transcript -1 41245587 ENST00000412061
#> 18 ENSG00000012048 Transcript -1 41245601 ENST00000470026
#> 19 ENSG00000012048 Transcript -1 41245603 ENST00000477152
#> 20 ENSG00000012048 Transcript -1 41262552 ENST00000492859
#> 21 ENSG00000012048 Transcript -1 41246129 ENST00000497488
#> 22 ENSG00000012048 Transcript -1 41246129 ENST00000494123
#> 23 ENSG00000012048 Transcript -1 41246187 ENST00000473961
#> 24 ENSG00000012048 Transcript -1 41247863 ENST00000476777
#> 25 ENSG00000012048 Transcript -1 41256972 ENST00000461798
#> 26 ENSG00000012048 Transcript -1 41256206 ENST00000489037
#> 27 ENSG00000012048 Transcript -1 41197695 ENST00000354071
#> 28 ENSG00000012048 Transcript -1 41197695 ENST00000352993
#> 29 ENSG00000012048 Transcript -1 41197695 ENST00000346315
#> 30 ENSG00000012048 Transcript -1 41197695 ENST00000351666
#> 31 ENSG00000012048 Transcript -1 41197695 ENST00000309486
#> Translation.object_type Translation.length Translation.version
#> 1 Translation 1863 3
#> 2 Translation 699 1
#> 3 Translation 173 1
#> 4 Translation 354 1
#> 5 Translation 96 1
#> 6 Translation 1816 1
#> 7 Translation 1884 2
#> 8 Translation 63 1
#> 9 Translation 759 2
#> 10 Translation 498 1
#> 11 Translation 623 1
#> 12 Translation 572 1
#> 13 <NA> NA NA
#> 14 Translation 266 1
#> 15 Translation 242 1
#> 16 <NA> NA NA
#> 17 Translation 437 3
#> 18 Translation 649 1
#> 19 Translation 622 1
#> 20 Translation 59 1
#> 21 Translation 177 1
#> 22 Translation 473 1
#> 23 Translation 319 1
#> 24 Translation 222 1
#> 25 Translation 63 1
#> 26 Translation 98 1
#> 27 Translation 1598 6
#> 28 Translation 721 5
#> 29 Translation 1624 4
#> 30 Translation 680 3
#> 31 Translation 1567 4
#> Translation.id Translation.species Translation.db_type Translation.end
#> 1 ENSP00000350283 human core 41276113
#> 2 ENSP00000417148 human core 41276113
#> 3 ENSP00000465818 human core 41277202
#> 4 ENSP00000467329 human core 41226495
#> 5 ENSP00000465347 human core 41202109
#> 6 ENSP00000418775 human core 41258543
#> 7 ENSP00000418960 human core 41276113
#> 8 ENSP00000418548 human core 41276113
#> 9 ENSP00000420705 human core 41276113
#> 10 ENSP00000419481 human core 41256933
#> 11 ENSP00000420412 human core 41276113
#> 12 ENSP00000418819 human core 41258543
#> 13 <NA> <NA> <NA> NA
#> 14 ENSP00000418212 human core 41256933
#> 15 ENSP00000417241 human core 41243841
#> 16 <NA> <NA> <NA> NA
#> 17 ENSP00000397145 human core 41247883
#> 18 ENSP00000419274 human core 41276113
#> 19 ENSP00000419988 human core 41276113
#> 20 ENSP00000420253 human core 41276113
#> 21 ENSP00000418986 human core 41246659
#> 22 ENSP00000419103 human core 41276113
#> 23 ENSP00000420201 human core 41256908
#> 24 ENSP00000417554 human core 41276113
#> 25 ENSP00000417988 human core 41276113
#> 26 ENSP00000420781 human core 41276113
#> 27 ENSP00000326002 human core 41276113
#> 28 ENSP00000312236 human core 41276113
#> 29 ENSP00000246907 human core 41276113
#> 30 ENSP00000338007 human core 41276113
#> 31 ENSP00000310938 human core 41246659
#> end is_canonical logic_name species assembly_name
#> 1 41277387 0 ensembl_havana_transcript human GRCh37
#> 2 41277468 0 ensembl_havana_transcript human GRCh37
#> 3 41277346 0 havana_homo_sapiens_37 human GRCh37
#> 4 41277346 0 havana_homo_sapiens_37 human GRCh37
#> 5 41277346 0 havana_homo_sapiens_37 human GRCh37
#> 6 41277419 0 ensembl_havana_transcript human GRCh37
#> 7 41277500 1 ensembl_havana_transcript human GRCh37
#> 8 41277305 0 havana_homo_sapiens_37 human GRCh37
#> 9 41277373 0 havana_homo_sapiens_37 human GRCh37
#> 10 41256933 0 havana_homo_sapiens_37 human GRCh37
#> 11 41277376 0 havana_homo_sapiens_37 human GRCh37
#> 12 41277419 0 havana_homo_sapiens_37 human GRCh37
#> 13 41223083 0 havana_homo_sapiens_37 human GRCh37
#> 14 41256933 0 havana_homo_sapiens_37 human GRCh37
#> 15 41243841 0 havana_homo_sapiens_37 human GRCh37
#> 16 41277332 0 havana_homo_sapiens_37 human GRCh37
#> 17 41247883 0 havana_homo_sapiens_37 human GRCh37
#> 18 41277340 0 havana_homo_sapiens_37 human GRCh37
#> 19 41277381 0 havana_homo_sapiens_37 human GRCh37
#> 20 41277317 0 havana_homo_sapiens_37 human GRCh37
#> 21 41277317 0 havana_homo_sapiens_37 human GRCh37
#> 22 41277467 0 havana_homo_sapiens_37 human GRCh37
#> 23 41256908 0 havana_homo_sapiens_37 human GRCh37
#> 24 41277370 0 havana_homo_sapiens_37 human GRCh37
#> 25 41277387 0 havana_homo_sapiens_37 human GRCh37
#> 26 41277338 0 havana_homo_sapiens_37 human GRCh37
#> 27 41277500 0 ensembl_homo_sapiens_37 human GRCh37
#> 28 41277500 0 ensembl_homo_sapiens_37 human GRCh37
#> 29 41277468 0 ensembl_homo_sapiens_37 human GRCh37
#> 30 41276132 0 ensembl_homo_sapiens_37 human GRCh37
#> 31 41277468 0 ensembl_homo_sapiens_37 human GRCh37
#> source
#> 1 ensembl_havana
#> 2 ensembl_havana
#> 3 havana
#> 4 havana
#> 5 havana
#> 6 ensembl_havana
#> 7 ensembl_havana
#> 8 havana
#> 9 havana
#> 10 havana
#> 11 havana
#> 12 havana
#> 13 havana
#> 14 havana
#> 15 havana
#> 16 havana
#> 17 havana
#> 18 havana
#> 19 havana
#> 20 havana
#> 21 havana
#> 22 havana
#> 23 havana
#> 24 havana
#> 25 havana
#> 26 havana
#> 27 ensembl
#> 28 ensembl
#> 29 ensembl
#> 30 ensembl
#> 31 ensembl
#>
#> $strand
#> [1] -1
#>
#> $object_type
#> [1] "Gene"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $end
#> [1] 41277500
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $species
#> [1] "human"
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $version
#> [1] 15
#>
#> $start
#> [1] 41196312
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $db_type
#> [1] "core"
#>
#> $biotype
#> [1] "protein_coding"
#>
queryEnsemblByGene("ENSG00000139618")
#> $seq_region_name
#> [1] "13"
#>
#> $id
#> [1] "ENSG00000139618"
#>
#> $Transcript
#> start gencode_primary version display_name biotype db_type
#> 1 32889611 0 3 BRCA2-001 protein_coding core
#> 2 32889642 0 2 BRCA2-003 protein_coding core
#> 3 32945108 0 1 BRCA2-005 nonsense_mediated_decay core
#> 4 32953977 0 1 BRCA2-002 nonsense_mediated_decay core
#> 5 32970946 0 1 BRCA2-006 retained_intron core
#> 6 32889617 0 1 BRCA2-201 protein_coding core
#> Exon object_type Parent strand length seq_region_name
#> 1 c(1, 1, .... Transcript ENSG00000139618 1 10930 13
#> 2 c("core".... Transcript ENSG00000139618 1 2011 13
#> 3 c("13", .... Transcript ENSG00000139618 1 495 13
#> 4 c(329540.... Transcript ENSG00000139618 1 842 13
#> 5 c(1, 1),.... Transcript ENSG00000139618 1 523 13
#> 6 c(328898.... Transcript ENSG00000139618 1 10984 13
#> id species source assembly_name Translation.id
#> 1 ENST00000380152 homo_sapiens ensembl_havana GRCh37 ENSP00000369497
#> 2 ENST00000530893 homo_sapiens havana GRCh37 ENSP00000435699
#> 3 ENST00000528762 homo_sapiens havana GRCh37 ENSP00000433168
#> 4 ENST00000470094 homo_sapiens havana GRCh37 ENSP00000434898
#> 5 ENST00000533776 homo_sapiens havana GRCh37 <NA>
#> 6 ENST00000544455 homo_sapiens ensembl GRCh37 ENSP00000439902
#> Translation.length Translation.version Translation.Parent Translation.start
#> 1 3418 3 ENST00000380152 32890598
#> 2 481 2 ENST00000530893 32899266
#> 3 64 1 ENST00000528762 32945108
#> 4 186 1 ENST00000470094 32953977
#> 5 NA NA <NA> NA
#> 6 3418 1 ENST00000544455 32890598
#> Translation.object_type Translation.db_type Translation.end
#> 1 Translation core 32972907
#> 2 Translation core 32907428
#> 3 Translation core 32950807
#> 4 Translation core 32970229
#> 5 <NA> <NA> NA
#> 6 Translation core 32972907
#> Translation.species is_canonical end logic_name
#> 1 homo_sapiens 0 32973347 ensembl_havana_transcript
#> 2 homo_sapiens 0 32907428 havana_homo_sapiens_37
#> 3 homo_sapiens 0 32953632 havana_homo_sapiens_37
#> 4 homo_sapiens 0 32972409 havana_homo_sapiens_37
#> 5 <NA> 0 32972585 havana_homo_sapiens_37
#> 6 homo_sapiens 1 32973805 ensembl_homo_sapiens_37
#>
#> $strand
#> [1] 1
#>
#> $object_type
#> [1] "Gene"
#>
#> $canonical_transcript
#> [1] "ENST00000544455.1"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $end
#> [1] 32973805
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $species
#> [1] "homo_sapiens"
#>
#> $display_name
#> [1] "BRCA2"
#>
#> $version
#> [1] 10
#>
#> $start
#> [1] 32889611
#>
#> $description
#> [1] "breast cancer 2, early onset [Source:HGNC Symbol;Acc:1101]"
#>
#> $db_type
#> [1] "core"
#>
#> $biotype
#> [1] "protein_coding"
#>
event <- "SE_17_-_41251792_41249306_41249261_41246877_BRCA1"
queryEnsemblByEvent(event, species="human", assembly="hg19")
#> $start
#> [1] 41196312
#>
#> $species
#> [1] "human"
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $end
#> [1] 41277500
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $object_type
#> [1] "Gene"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $seq_region_name
#> [1] "17"
#>
#> $db_type
#> [1] "core"
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $Transcript
#> object_type source biotype seq_region_name db_type
#> 1 Transcript ensembl_havana protein_coding 17 core
#> 2 Transcript ensembl_havana protein_coding 17 core
#> 3 Transcript havana protein_coding 17 core
#> 4 Transcript havana protein_coding 17 core
#> 5 Transcript havana protein_coding 17 core
#> 6 Transcript ensembl_havana protein_coding 17 core
#> 7 Transcript ensembl_havana protein_coding 17 core
#> 8 Transcript havana nonsense_mediated_decay 17 core
#> 9 Transcript havana protein_coding 17 core
#> 10 Transcript havana protein_coding 17 core
#> 11 Transcript havana protein_coding 17 core
#> 12 Transcript havana protein_coding 17 core
#> 13 Transcript havana retained_intron 17 core
#> 14 Transcript havana protein_coding 17 core
#> 15 Transcript havana protein_coding 17 core
#> 16 Transcript havana retained_intron 17 core
#> 17 Transcript havana non_stop_decay 17 core
#> 18 Transcript havana protein_coding 17 core
#> 19 Transcript havana protein_coding 17 core
#> 20 Transcript havana nonsense_mediated_decay 17 core
#> 21 Transcript havana protein_coding 17 core
#> 22 Transcript havana protein_coding 17 core
#> 23 Transcript havana protein_coding 17 core
#> 24 Transcript havana protein_coding 17 core
#> 25 Transcript havana nonsense_mediated_decay 17 core
#> 26 Transcript havana protein_coding 17 core
#> 27 Transcript ensembl protein_coding 17 core
#> 28 Transcript ensembl protein_coding 17 core
#> 29 Transcript ensembl protein_coding 17 core
#> 30 Transcript ensembl protein_coding 17 core
#> 31 Transcript ensembl protein_coding 17 core
#> logic_name id assembly_name length version
#> 1 ensembl_havana_transcript ENST00000357654 GRCh37 7094 3
#> 2 ensembl_havana_transcript ENST00000468300 GRCh37 3273 1
#> 3 havana_homo_sapiens_37 ENST00000586385 GRCh37 781 1
#> 4 havana_homo_sapiens_37 ENST00000591534 GRCh37 1282 1
#> 5 havana_homo_sapiens_37 ENST00000591849 GRCh37 563 1
#> 6 ensembl_havana_transcript ENST00000493795 GRCh37 5732 1
#> 7 ensembl_havana_transcript ENST00000471181 GRCh37 5936 2
#> 8 havana_homo_sapiens_37 ENST00000461221 GRCh37 5693 1
#> 9 havana_homo_sapiens_37 ENST00000491747 GRCh37 2379 2
#> 10 havana_homo_sapiens_37 ENST00000484087 GRCh37 1495 1
#> 11 havana_homo_sapiens_37 ENST00000478531 GRCh37 1972 1
#> 12 havana_homo_sapiens_37 ENST00000493919 GRCh37 1948 1
#> 13 havana_homo_sapiens_37 ENST00000472490 GRCh37 561 1
#> 14 havana_homo_sapiens_37 ENST00000487825 GRCh37 800 1
#> 15 havana_homo_sapiens_37 ENST00000461574 GRCh37 726 1
#> 16 havana_homo_sapiens_37 ENST00000467274 GRCh37 4497 1
#> 17 havana_homo_sapiens_37 ENST00000412061 GRCh37 1312 3
#> 18 havana_homo_sapiens_37 ENST00000470026 GRCh37 2108 1
#> 19 havana_homo_sapiens_37 ENST00000477152 GRCh37 1980 1
#> 20 havana_homo_sapiens_37 ENST00000492859 GRCh37 1584 1
#> 21 havana_homo_sapiens_37 ENST00000497488 GRCh37 779 1
#> 22 havana_homo_sapiens_37 ENST00000494123 GRCh37 1612 1
#> 23 havana_homo_sapiens_37 ENST00000473961 GRCh37 958 1
#> 24 havana_homo_sapiens_37 ENST00000476777 GRCh37 769 1
#> 25 havana_homo_sapiens_37 ENST00000461798 GRCh37 582 1
#> 26 havana_homo_sapiens_37 ENST00000489037 GRCh37 455 1
#> 27 ensembl_homo_sapiens_37 ENST00000354071 GRCh37 6411 3
#> 28 ensembl_homo_sapiens_37 ENST00000352993 GRCh37 3780 3
#> 29 ensembl_homo_sapiens_37 ENST00000346315 GRCh37 6451 3
#> 30 ensembl_homo_sapiens_37 ENST00000351666 GRCh37 3444 3
#> 31 ensembl_homo_sapiens_37 ENST00000309486 GRCh37 7114 4
#> strand Parent Translation.id Translation.db_type
#> 1 -1 ENSG00000012048 ENSP00000350283 core
#> 2 -1 ENSG00000012048 ENSP00000417148 core
#> 3 -1 ENSG00000012048 ENSP00000465818 core
#> 4 -1 ENSG00000012048 ENSP00000467329 core
#> 5 -1 ENSG00000012048 ENSP00000465347 core
#> 6 -1 ENSG00000012048 ENSP00000418775 core
#> 7 -1 ENSG00000012048 ENSP00000418960 core
#> 8 -1 ENSG00000012048 ENSP00000418548 core
#> 9 -1 ENSG00000012048 ENSP00000420705 core
#> 10 -1 ENSG00000012048 ENSP00000419481 core
#> 11 -1 ENSG00000012048 ENSP00000420412 core
#> 12 -1 ENSG00000012048 ENSP00000418819 core
#> 13 -1 ENSG00000012048 <NA> <NA>
#> 14 -1 ENSG00000012048 ENSP00000418212 core
#> 15 -1 ENSG00000012048 ENSP00000417241 core
#> 16 -1 ENSG00000012048 <NA> <NA>
#> 17 -1 ENSG00000012048 ENSP00000397145 core
#> 18 -1 ENSG00000012048 ENSP00000419274 core
#> 19 -1 ENSG00000012048 ENSP00000419988 core
#> 20 -1 ENSG00000012048 ENSP00000420253 core
#> 21 -1 ENSG00000012048 ENSP00000418986 core
#> 22 -1 ENSG00000012048 ENSP00000419103 core
#> 23 -1 ENSG00000012048 ENSP00000420201 core
#> 24 -1 ENSG00000012048 ENSP00000417554 core
#> 25 -1 ENSG00000012048 ENSP00000417988 core
#> 26 -1 ENSG00000012048 ENSP00000420781 core
#> 27 -1 ENSG00000012048 ENSP00000326002 core
#> 28 -1 ENSG00000012048 ENSP00000312236 core
#> 29 -1 ENSG00000012048 ENSP00000246907 core
#> 30 -1 ENSG00000012048 ENSP00000338007 core
#> 31 -1 ENSG00000012048 ENSP00000310938 core
#> Translation.species Translation.start Translation.object_type
#> 1 human 41197695 Translation
#> 2 human 41197801 Translation
#> 3 human 41197695 Translation
#> 4 human 41197695 Translation
#> 5 human 41197695 Translation
#> 6 human 41197695 Translation
#> 7 human 41197695 Translation
#> 8 human 41256972 Translation
#> 9 human 41197695 Translation
#> 10 human 41215361 Translation
#> 11 human 41215361 Translation
#> 12 human 41215377 Translation
#> 13 <NA> NA <NA>
#> 14 human 41228505 Translation
#> 15 human 41228554 Translation
#> 16 <NA> NA <NA>
#> 17 human 41245587 Translation
#> 18 human 41245601 Translation
#> 19 human 41245603 Translation
#> 20 human 41262552 Translation
#> 21 human 41246129 Translation
#> 22 human 41246129 Translation
#> 23 human 41246187 Translation
#> 24 human 41247863 Translation
#> 25 human 41256972 Translation
#> 26 human 41256206 Translation
#> 27 human 41197695 Translation
#> 28 human 41197695 Translation
#> 29 human 41197695 Translation
#> 30 human 41197695 Translation
#> 31 human 41197695 Translation
#> Translation.Parent Translation.version Translation.length Translation.end
#> 1 ENST00000357654 3 1863 41276113
#> 2 ENST00000468300 1 699 41276113
#> 3 ENST00000586385 1 173 41277202
#> 4 ENST00000591534 1 354 41226495
#> 5 ENST00000591849 1 96 41202109
#> 6 ENST00000493795 1 1816 41258543
#> 7 ENST00000471181 2 1884 41276113
#> 8 ENST00000461221 1 63 41276113
#> 9 ENST00000491747 2 759 41276113
#> 10 ENST00000484087 1 498 41256933
#> 11 ENST00000478531 1 623 41276113
#> 12 ENST00000493919 1 572 41258543
#> 13 <NA> NA NA NA
#> 14 ENST00000487825 1 266 41256933
#> 15 ENST00000461574 1 242 41243841
#> 16 <NA> NA NA NA
#> 17 ENST00000412061 3 437 41247883
#> 18 ENST00000470026 1 649 41276113
#> 19 ENST00000477152 1 622 41276113
#> 20 ENST00000492859 1 59 41276113
#> 21 ENST00000497488 1 177 41246659
#> 22 ENST00000494123 1 473 41276113
#> 23 ENST00000473961 1 319 41256908
#> 24 ENST00000476777 1 222 41276113
#> 25 ENST00000461798 1 63 41276113
#> 26 ENST00000489037 1 98 41276113
#> 27 ENST00000354071 6 1598 41276113
#> 28 ENST00000352993 5 721 41276113
#> 29 ENST00000346315 4 1624 41276113
#> 30 ENST00000351666 3 680 41276113
#> 31 ENST00000309486 4 1567 41246659
#> gencode_primary is_canonical start species Exon display_name
#> 1 0 0 41196312 human c(1, 1, .... BRCA1-001
#> 2 0 0 41196822 human c("GRCh3.... BRCA1-007
#> 3 0 0 41197580 human c("Exon".... BRCA1-023
#> 4 0 0 41197580 human c(412772.... BRCA1-024
#> 5 0 0 41197580 human c("Exon".... BRCA1-025
#> 6 0 0 41197646 human c("GRCh3.... BRCA1-006
#> 7 0 1 41197646 human c(-1, -1.... BRCA1-005
#> 8 0 0 41197695 human c(412773.... BRCA1-010
#> 9 0 0 41197695 human c("GRCh3.... BRCA1-014
#> 10 0 0 41215361 human c(-1, -1.... BRCA1-015
#> 11 0 0 41215361 human c(412772.... BRCA1-009
#> 12 0 0 41215377 human c(412772.... BRCA1-008
#> 13 0 0 41219291 human c(1, 1),.... BRCA1-021
#> 14 0 0 41228505 human c("GRCh3.... BRCA1-019
#> 15 0 0 41228554 human c("core".... BRCA1-022
#> 16 0 0 41243115 human c("core".... BRCA1-012
#> 17 0 0 41245587 human c(412478.... BRCA1-026
#> 18 0 0 41245601 human c("ENSE0.... BRCA1-011
#> 19 0 0 41245603 human c("Exon".... BRCA1-004
#> 20 0 0 41246129 human c("Exon".... BRCA1-002
#> 21 0 0 41246129 human c("ENSE0.... BRCA1-003
#> 22 0 0 41246129 human c(412772.... BRCA1-013
#> 23 0 0 41246187 human c("ENSE0.... BRCA1-018
#> 24 0 0 41247863 human c("17", .... BRCA1-017
#> 25 0 0 41251848 human c(1, 1, .... BRCA1-020
#> 26 0 0 41256206 human c("core".... BRCA1-016
#> 27 0 0 41196313 human c(1, 1, .... BRCA1-205
#> 28 0 0 41196313 human c("Exon".... BRCA1-204
#> 29 0 0 41196313 human c(412774.... BRCA1-202
#> 30 0 0 41196313 human c("17", .... BRCA1-203
#> 31 0 0 41196313 human c(412774.... BRCA1-201
#> end
#> 1 41277387
#> 2 41277468
#> 3 41277346
#> 4 41277346
#> 5 41277346
#> 6 41277419
#> 7 41277500
#> 8 41277305
#> 9 41277373
#> 10 41256933
#> 11 41277376
#> 12 41277419
#> 13 41223083
#> 14 41256933
#> 15 41243841
#> 16 41277332
#> 17 41247883
#> 18 41277340
#> 19 41277381
#> 20 41277317
#> 21 41277317
#> 22 41277467
#> 23 41256908
#> 24 41277370
#> 25 41277387
#> 26 41277338
#> 27 41277500
#> 28 41277500
#> 29 41277468
#> 30 41276132
#> 31 41277468
#>
#> $strand
#> [1] -1
#>
#> $version
#> [1] 15
#>