Query information from Ensembl
Usage
queryEnsemblByGene(gene, species = NULL, assembly = NULL)
queryEnsemblByEvent(event, species = NULL, assembly = NULL, data = NULL)See also
Other functions to retrieve external information:
ensemblToUniprot(),
plotProtein(),
plotTranscripts()
Examples
queryEnsemblByGene("BRCA1", "human", "hg19")
#> $db_type
#> [1] "core"
#>
#> $object_type
#> [1] "Gene"
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $Transcript
#> start length gencode_primary version id assembly_name
#> 1 41196312 7094 0 3 ENST00000357654 GRCh37
#> 2 41196822 3273 0 1 ENST00000468300 GRCh37
#> 3 41197580 781 0 1 ENST00000586385 GRCh37
#> 4 41197580 1282 0 1 ENST00000591534 GRCh37
#> 5 41197580 563 0 1 ENST00000591849 GRCh37
#> 6 41197646 5732 0 1 ENST00000493795 GRCh37
#> 7 41197646 5936 0 2 ENST00000471181 GRCh37
#> 8 41197695 5693 0 1 ENST00000461221 GRCh37
#> 9 41197695 2379 0 2 ENST00000491747 GRCh37
#> 10 41215361 1495 0 1 ENST00000484087 GRCh37
#> 11 41215361 1972 0 1 ENST00000478531 GRCh37
#> 12 41215377 1948 0 1 ENST00000493919 GRCh37
#> 13 41219291 561 0 1 ENST00000472490 GRCh37
#> 14 41228505 800 0 1 ENST00000487825 GRCh37
#> 15 41228554 726 0 1 ENST00000461574 GRCh37
#> 16 41243115 4497 0 1 ENST00000467274 GRCh37
#> 17 41245587 1312 0 3 ENST00000412061 GRCh37
#> 18 41245601 2108 0 1 ENST00000470026 GRCh37
#> 19 41245603 1980 0 1 ENST00000477152 GRCh37
#> 20 41246129 1584 0 1 ENST00000492859 GRCh37
#> 21 41246129 779 0 1 ENST00000497488 GRCh37
#> 22 41246129 1612 0 1 ENST00000494123 GRCh37
#> 23 41246187 958 0 1 ENST00000473961 GRCh37
#> 24 41247863 769 0 1 ENST00000476777 GRCh37
#> 25 41251848 582 0 1 ENST00000461798 GRCh37
#> 26 41256206 455 0 1 ENST00000489037 GRCh37
#> 27 41196313 6411 0 3 ENST00000354071 GRCh37
#> 28 41196313 3780 0 3 ENST00000352993 GRCh37
#> 29 41196313 6451 0 3 ENST00000346315 GRCh37
#> 30 41196313 3444 0 3 ENST00000351666 GRCh37
#> 31 41196313 7114 0 4 ENST00000309486 GRCh37
#> display_name Exon object_type Translation.object_type
#> 1 BRCA1-001 c("ENSE0.... Transcript Translation
#> 2 BRCA1-007 c("Exon".... Transcript Translation
#> 3 BRCA1-023 c("core".... Transcript Translation
#> 4 BRCA1-024 c("Exon".... Transcript Translation
#> 5 BRCA1-025 c("Exon".... Transcript Translation
#> 6 BRCA1-006 c(412774.... Transcript Translation
#> 7 BRCA1-005 c("Exon".... Transcript Translation
#> 8 BRCA1-010 c(412773.... Transcript Translation
#> 9 BRCA1-014 c("core".... Transcript Translation
#> 10 BRCA1-015 c("Exon".... Transcript Translation
#> 11 BRCA1-009 c("core".... Transcript Translation
#> 12 BRCA1-008 c("Exon".... Transcript Translation
#> 13 BRCA1-021 c("Exon".... Transcript <NA>
#> 14 BRCA1-019 c("GRCh3.... Transcript Translation
#> 15 BRCA1-022 c("ENSE0.... Transcript Translation
#> 16 BRCA1-012 c("ENSE0.... Transcript <NA>
#> 17 BRCA1-026 c("Exon".... Transcript Translation
#> 18 BRCA1-011 c(1, 1, .... Transcript Translation
#> 19 BRCA1-004 c("core".... Transcript Translation
#> 20 BRCA1-002 c(-1, -1.... Transcript Translation
#> 21 BRCA1-003 c(412772.... Transcript Translation
#> 22 BRCA1-013 c("Exon".... Transcript Translation
#> 23 BRCA1-018 c("Exon".... Transcript Translation
#> 24 BRCA1-017 c("core".... Transcript Translation
#> 25 BRCA1-020 c("core".... Transcript Translation
#> 26 BRCA1-016 c(-1, -1.... Transcript Translation
#> 27 BRCA1-205 c("ENSE0.... Transcript Translation
#> 28 BRCA1-204 c("GRCh3.... Transcript Translation
#> 29 BRCA1-202 c("core".... Transcript Translation
#> 30 BRCA1-203 c(412760.... Transcript Translation
#> 31 BRCA1-201 c("Exon".... Transcript Translation
#> Translation.db_type Translation.species Translation.version
#> 1 core human 3
#> 2 core human 1
#> 3 core human 1
#> 4 core human 1
#> 5 core human 1
#> 6 core human 1
#> 7 core human 2
#> 8 core human 1
#> 9 core human 2
#> 10 core human 1
#> 11 core human 1
#> 12 core human 1
#> 13 <NA> <NA> NA
#> 14 core human 1
#> 15 core human 1
#> 16 <NA> <NA> NA
#> 17 core human 3
#> 18 core human 1
#> 19 core human 1
#> 20 core human 1
#> 21 core human 1
#> 22 core human 1
#> 23 core human 1
#> 24 core human 1
#> 25 core human 1
#> 26 core human 1
#> 27 core human 6
#> 28 core human 5
#> 29 core human 4
#> 30 core human 3
#> 31 core human 4
#> Translation.Parent Translation.length Translation.start Translation.end
#> 1 ENST00000357654 1863 41197695 41276113
#> 2 ENST00000468300 699 41197801 41276113
#> 3 ENST00000586385 173 41197695 41277202
#> 4 ENST00000591534 354 41197695 41226495
#> 5 ENST00000591849 96 41197695 41202109
#> 6 ENST00000493795 1816 41197695 41258543
#> 7 ENST00000471181 1884 41197695 41276113
#> 8 ENST00000461221 63 41256972 41276113
#> 9 ENST00000491747 759 41197695 41276113
#> 10 ENST00000484087 498 41215361 41256933
#> 11 ENST00000478531 623 41215361 41276113
#> 12 ENST00000493919 572 41215377 41258543
#> 13 <NA> NA NA NA
#> 14 ENST00000487825 266 41228505 41256933
#> 15 ENST00000461574 242 41228554 41243841
#> 16 <NA> NA NA NA
#> 17 ENST00000412061 437 41245587 41247883
#> 18 ENST00000470026 649 41245601 41276113
#> 19 ENST00000477152 622 41245603 41276113
#> 20 ENST00000492859 59 41262552 41276113
#> 21 ENST00000497488 177 41246129 41246659
#> 22 ENST00000494123 473 41246129 41276113
#> 23 ENST00000473961 319 41246187 41256908
#> 24 ENST00000476777 222 41247863 41276113
#> 25 ENST00000461798 63 41256972 41276113
#> 26 ENST00000489037 98 41256206 41276113
#> 27 ENST00000354071 1598 41197695 41276113
#> 28 ENST00000352993 721 41197695 41276113
#> 29 ENST00000346315 1624 41197695 41276113
#> 30 ENST00000351666 680 41197695 41276113
#> 31 ENST00000309486 1567 41197695 41246659
#> Translation.id db_type Parent seq_region_name
#> 1 ENSP00000350283 core ENSG00000012048 17
#> 2 ENSP00000417148 core ENSG00000012048 17
#> 3 ENSP00000465818 core ENSG00000012048 17
#> 4 ENSP00000467329 core ENSG00000012048 17
#> 5 ENSP00000465347 core ENSG00000012048 17
#> 6 ENSP00000418775 core ENSG00000012048 17
#> 7 ENSP00000418960 core ENSG00000012048 17
#> 8 ENSP00000418548 core ENSG00000012048 17
#> 9 ENSP00000420705 core ENSG00000012048 17
#> 10 ENSP00000419481 core ENSG00000012048 17
#> 11 ENSP00000420412 core ENSG00000012048 17
#> 12 ENSP00000418819 core ENSG00000012048 17
#> 13 <NA> core ENSG00000012048 17
#> 14 ENSP00000418212 core ENSG00000012048 17
#> 15 ENSP00000417241 core ENSG00000012048 17
#> 16 <NA> core ENSG00000012048 17
#> 17 ENSP00000397145 core ENSG00000012048 17
#> 18 ENSP00000419274 core ENSG00000012048 17
#> 19 ENSP00000419988 core ENSG00000012048 17
#> 20 ENSP00000420253 core ENSG00000012048 17
#> 21 ENSP00000418986 core ENSG00000012048 17
#> 22 ENSP00000419103 core ENSG00000012048 17
#> 23 ENSP00000420201 core ENSG00000012048 17
#> 24 ENSP00000417554 core ENSG00000012048 17
#> 25 ENSP00000417988 core ENSG00000012048 17
#> 26 ENSP00000420781 core ENSG00000012048 17
#> 27 ENSP00000326002 core ENSG00000012048 17
#> 28 ENSP00000312236 core ENSG00000012048 17
#> 29 ENSP00000246907 core ENSG00000012048 17
#> 30 ENSP00000338007 core ENSG00000012048 17
#> 31 ENSP00000310938 core ENSG00000012048 17
#> biotype species strand logic_name end
#> 1 protein_coding human -1 ensembl_havana_transcript 41277387
#> 2 protein_coding human -1 ensembl_havana_transcript 41277468
#> 3 protein_coding human -1 havana_homo_sapiens_37 41277346
#> 4 protein_coding human -1 havana_homo_sapiens_37 41277346
#> 5 protein_coding human -1 havana_homo_sapiens_37 41277346
#> 6 protein_coding human -1 ensembl_havana_transcript 41277419
#> 7 protein_coding human -1 ensembl_havana_transcript 41277500
#> 8 nonsense_mediated_decay human -1 havana_homo_sapiens_37 41277305
#> 9 protein_coding human -1 havana_homo_sapiens_37 41277373
#> 10 protein_coding human -1 havana_homo_sapiens_37 41256933
#> 11 protein_coding human -1 havana_homo_sapiens_37 41277376
#> 12 protein_coding human -1 havana_homo_sapiens_37 41277419
#> 13 retained_intron human -1 havana_homo_sapiens_37 41223083
#> 14 protein_coding human -1 havana_homo_sapiens_37 41256933
#> 15 protein_coding human -1 havana_homo_sapiens_37 41243841
#> 16 retained_intron human -1 havana_homo_sapiens_37 41277332
#> 17 non_stop_decay human -1 havana_homo_sapiens_37 41247883
#> 18 protein_coding human -1 havana_homo_sapiens_37 41277340
#> 19 protein_coding human -1 havana_homo_sapiens_37 41277381
#> 20 nonsense_mediated_decay human -1 havana_homo_sapiens_37 41277317
#> 21 protein_coding human -1 havana_homo_sapiens_37 41277317
#> 22 protein_coding human -1 havana_homo_sapiens_37 41277467
#> 23 protein_coding human -1 havana_homo_sapiens_37 41256908
#> 24 protein_coding human -1 havana_homo_sapiens_37 41277370
#> 25 nonsense_mediated_decay human -1 havana_homo_sapiens_37 41277387
#> 26 protein_coding human -1 havana_homo_sapiens_37 41277338
#> 27 protein_coding human -1 ensembl_homo_sapiens_37 41277500
#> 28 protein_coding human -1 ensembl_homo_sapiens_37 41277500
#> 29 protein_coding human -1 ensembl_homo_sapiens_37 41277468
#> 30 protein_coding human -1 ensembl_homo_sapiens_37 41276132
#> 31 protein_coding human -1 ensembl_homo_sapiens_37 41277468
#> source is_canonical
#> 1 ensembl_havana 0
#> 2 ensembl_havana 0
#> 3 havana 0
#> 4 havana 0
#> 5 havana 0
#> 6 ensembl_havana 0
#> 7 ensembl_havana 1
#> 8 havana 0
#> 9 havana 0
#> 10 havana 0
#> 11 havana 0
#> 12 havana 0
#> 13 havana 0
#> 14 havana 0
#> 15 havana 0
#> 16 havana 0
#> 17 havana 0
#> 18 havana 0
#> 19 havana 0
#> 20 havana 0
#> 21 havana 0
#> 22 havana 0
#> 23 havana 0
#> 24 havana 0
#> 25 havana 0
#> 26 havana 0
#> 27 ensembl 0
#> 28 ensembl 0
#> 29 ensembl 0
#> 30 ensembl 0
#> 31 ensembl 0
#>
#> $version
#> [1] 15
#>
#> $start
#> [1] 41196312
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $end
#> [1] 41277500
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $strand
#> [1] -1
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $species
#> [1] "human"
#>
#> $seq_region_name
#> [1] "17"
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
queryEnsemblByGene("ENSG00000139618")
#> $description
#> [1] "breast cancer 2, early onset [Source:HGNC Symbol;Acc:1101]"
#>
#> $db_type
#> [1] "core"
#>
#> $end
#> [1] 32973805
#>
#> $seq_region_name
#> [1] "13"
#>
#> $species
#> [1] "homo_sapiens"
#>
#> $strand
#> [1] 1
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $object_type
#> [1] "Gene"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $version
#> [1] 10
#>
#> $id
#> [1] "ENSG00000139618"
#>
#> $Transcript
#> id gencode_primary logic_name object_type
#> 1 ENST00000380152 0 ensembl_havana_transcript Transcript
#> 2 ENST00000530893 0 havana_homo_sapiens_37 Transcript
#> 3 ENST00000528762 0 havana_homo_sapiens_37 Transcript
#> 4 ENST00000470094 0 havana_homo_sapiens_37 Transcript
#> 5 ENST00000533776 0 havana_homo_sapiens_37 Transcript
#> 6 ENST00000544455 0 ensembl_homo_sapiens_37 Transcript
#> biotype version assembly_name length source
#> 1 protein_coding 3 GRCh37 10930 ensembl_havana
#> 2 protein_coding 2 GRCh37 2011 havana
#> 3 nonsense_mediated_decay 1 GRCh37 495 havana
#> 4 nonsense_mediated_decay 1 GRCh37 842 havana
#> 5 retained_intron 1 GRCh37 523 havana
#> 6 protein_coding 1 GRCh37 10984 ensembl
#> Translation.Parent Translation.end Translation.id Translation.version
#> 1 ENST00000380152 32972907 ENSP00000369497 3
#> 2 ENST00000530893 32907428 ENSP00000435699 2
#> 3 ENST00000528762 32950807 ENSP00000433168 1
#> 4 ENST00000470094 32970229 ENSP00000434898 1
#> 5 <NA> NA <NA> NA
#> 6 ENST00000544455 32972907 ENSP00000439902 1
#> Translation.object_type Translation.db_type Translation.length
#> 1 Translation core 3418
#> 2 Translation core 481
#> 3 Translation core 64
#> 4 Translation core 186
#> 5 <NA> <NA> NA
#> 6 Translation core 3418
#> Translation.start Translation.species display_name start end
#> 1 32890598 homo_sapiens BRCA2-001 32889611 32973347
#> 2 32899266 homo_sapiens BRCA2-003 32889642 32907428
#> 3 32945108 homo_sapiens BRCA2-005 32945108 32953632
#> 4 32953977 homo_sapiens BRCA2-002 32953977 32972409
#> 5 NA <NA> BRCA2-006 32970946 32972585
#> 6 32890598 homo_sapiens BRCA2-201 32889617 32973805
#> Parent seq_region_name db_type strand species Exon
#> 1 ENSG00000139618 13 core 1 homo_sapiens c("core"....
#> 2 ENSG00000139618 13 core 1 homo_sapiens c(1, 1, ....
#> 3 ENSG00000139618 13 core 1 homo_sapiens c("13", ....
#> 4 ENSG00000139618 13 core 1 homo_sapiens c(1, 1, ....
#> 5 ENSG00000139618 13 core 1 homo_sapiens c("GRCh3....
#> 6 ENSG00000139618 13 core 1 homo_sapiens c("ENSE0....
#> is_canonical
#> 1 0
#> 2 0
#> 3 0
#> 4 0
#> 5 0
#> 6 1
#>
#> $canonical_transcript
#> [1] "ENST00000544455.1"
#>
#> $display_name
#> [1] "BRCA2"
#>
#> $start
#> [1] 32889611
#>
#> $source
#> [1] "ensembl_havana"
#>
event <- "SE_17_-_41251792_41249306_41249261_41246877_BRCA1"
queryEnsemblByEvent(event, species="human", assembly="hg19")
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $object_type
#> [1] "Gene"
#>
#> $db_type
#> [1] "core"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $start
#> [1] 41196312
#>
#> $version
#> [1] 15
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $end
#> [1] 41277500
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $Transcript
#> Parent object_type db_type source assembly_name start
#> 1 ENSG00000012048 Transcript core ensembl_havana GRCh37 41196312
#> 2 ENSG00000012048 Transcript core ensembl_havana GRCh37 41196822
#> 3 ENSG00000012048 Transcript core havana GRCh37 41197580
#> 4 ENSG00000012048 Transcript core havana GRCh37 41197580
#> 5 ENSG00000012048 Transcript core havana GRCh37 41197580
#> 6 ENSG00000012048 Transcript core ensembl_havana GRCh37 41197646
#> 7 ENSG00000012048 Transcript core ensembl_havana GRCh37 41197646
#> 8 ENSG00000012048 Transcript core havana GRCh37 41197695
#> 9 ENSG00000012048 Transcript core havana GRCh37 41197695
#> 10 ENSG00000012048 Transcript core havana GRCh37 41215361
#> 11 ENSG00000012048 Transcript core havana GRCh37 41215361
#> 12 ENSG00000012048 Transcript core havana GRCh37 41215377
#> 13 ENSG00000012048 Transcript core havana GRCh37 41219291
#> 14 ENSG00000012048 Transcript core havana GRCh37 41228505
#> 15 ENSG00000012048 Transcript core havana GRCh37 41228554
#> 16 ENSG00000012048 Transcript core havana GRCh37 41243115
#> 17 ENSG00000012048 Transcript core havana GRCh37 41245587
#> 18 ENSG00000012048 Transcript core havana GRCh37 41245601
#> 19 ENSG00000012048 Transcript core havana GRCh37 41245603
#> 20 ENSG00000012048 Transcript core havana GRCh37 41246129
#> 21 ENSG00000012048 Transcript core havana GRCh37 41246129
#> 22 ENSG00000012048 Transcript core havana GRCh37 41246129
#> 23 ENSG00000012048 Transcript core havana GRCh37 41246187
#> 24 ENSG00000012048 Transcript core havana GRCh37 41247863
#> 25 ENSG00000012048 Transcript core havana GRCh37 41251848
#> 26 ENSG00000012048 Transcript core havana GRCh37 41256206
#> 27 ENSG00000012048 Transcript core ensembl GRCh37 41196313
#> 28 ENSG00000012048 Transcript core ensembl GRCh37 41196313
#> 29 ENSG00000012048 Transcript core ensembl GRCh37 41196313
#> 30 ENSG00000012048 Transcript core ensembl GRCh37 41196313
#> 31 ENSG00000012048 Transcript core ensembl GRCh37 41196313
#> version display_name length end id biotype
#> 1 3 BRCA1-001 7094 41277387 ENST00000357654 protein_coding
#> 2 1 BRCA1-007 3273 41277468 ENST00000468300 protein_coding
#> 3 1 BRCA1-023 781 41277346 ENST00000586385 protein_coding
#> 4 1 BRCA1-024 1282 41277346 ENST00000591534 protein_coding
#> 5 1 BRCA1-025 563 41277346 ENST00000591849 protein_coding
#> 6 1 BRCA1-006 5732 41277419 ENST00000493795 protein_coding
#> 7 2 BRCA1-005 5936 41277500 ENST00000471181 protein_coding
#> 8 1 BRCA1-010 5693 41277305 ENST00000461221 nonsense_mediated_decay
#> 9 2 BRCA1-014 2379 41277373 ENST00000491747 protein_coding
#> 10 1 BRCA1-015 1495 41256933 ENST00000484087 protein_coding
#> 11 1 BRCA1-009 1972 41277376 ENST00000478531 protein_coding
#> 12 1 BRCA1-008 1948 41277419 ENST00000493919 protein_coding
#> 13 1 BRCA1-021 561 41223083 ENST00000472490 retained_intron
#> 14 1 BRCA1-019 800 41256933 ENST00000487825 protein_coding
#> 15 1 BRCA1-022 726 41243841 ENST00000461574 protein_coding
#> 16 1 BRCA1-012 4497 41277332 ENST00000467274 retained_intron
#> 17 3 BRCA1-026 1312 41247883 ENST00000412061 non_stop_decay
#> 18 1 BRCA1-011 2108 41277340 ENST00000470026 protein_coding
#> 19 1 BRCA1-004 1980 41277381 ENST00000477152 protein_coding
#> 20 1 BRCA1-002 1584 41277317 ENST00000492859 nonsense_mediated_decay
#> 21 1 BRCA1-003 779 41277317 ENST00000497488 protein_coding
#> 22 1 BRCA1-013 1612 41277467 ENST00000494123 protein_coding
#> 23 1 BRCA1-018 958 41256908 ENST00000473961 protein_coding
#> 24 1 BRCA1-017 769 41277370 ENST00000476777 protein_coding
#> 25 1 BRCA1-020 582 41277387 ENST00000461798 nonsense_mediated_decay
#> 26 1 BRCA1-016 455 41277338 ENST00000489037 protein_coding
#> 27 3 BRCA1-205 6411 41277500 ENST00000354071 protein_coding
#> 28 3 BRCA1-204 3780 41277500 ENST00000352993 protein_coding
#> 29 3 BRCA1-202 6451 41277468 ENST00000346315 protein_coding
#> 30 3 BRCA1-203 3444 41276132 ENST00000351666 protein_coding
#> 31 4 BRCA1-201 7114 41277468 ENST00000309486 protein_coding
#> logic_name gencode_primary species is_canonical
#> 1 ensembl_havana_transcript 0 human 0
#> 2 ensembl_havana_transcript 0 human 0
#> 3 havana_homo_sapiens_37 0 human 0
#> 4 havana_homo_sapiens_37 0 human 0
#> 5 havana_homo_sapiens_37 0 human 0
#> 6 ensembl_havana_transcript 0 human 0
#> 7 ensembl_havana_transcript 0 human 1
#> 8 havana_homo_sapiens_37 0 human 0
#> 9 havana_homo_sapiens_37 0 human 0
#> 10 havana_homo_sapiens_37 0 human 0
#> 11 havana_homo_sapiens_37 0 human 0
#> 12 havana_homo_sapiens_37 0 human 0
#> 13 havana_homo_sapiens_37 0 human 0
#> 14 havana_homo_sapiens_37 0 human 0
#> 15 havana_homo_sapiens_37 0 human 0
#> 16 havana_homo_sapiens_37 0 human 0
#> 17 havana_homo_sapiens_37 0 human 0
#> 18 havana_homo_sapiens_37 0 human 0
#> 19 havana_homo_sapiens_37 0 human 0
#> 20 havana_homo_sapiens_37 0 human 0
#> 21 havana_homo_sapiens_37 0 human 0
#> 22 havana_homo_sapiens_37 0 human 0
#> 23 havana_homo_sapiens_37 0 human 0
#> 24 havana_homo_sapiens_37 0 human 0
#> 25 havana_homo_sapiens_37 0 human 0
#> 26 havana_homo_sapiens_37 0 human 0
#> 27 ensembl_homo_sapiens_37 0 human 0
#> 28 ensembl_homo_sapiens_37 0 human 0
#> 29 ensembl_homo_sapiens_37 0 human 0
#> 30 ensembl_homo_sapiens_37 0 human 0
#> 31 ensembl_homo_sapiens_37 0 human 0
#> seq_region_name Exon strand Translation.object_type
#> 1 17 c(-1, -1.... -1 Translation
#> 2 17 c(412774.... -1 Translation
#> 3 17 c(412773.... -1 Translation
#> 4 17 c(412773.... -1 Translation
#> 5 17 c(412772.... -1 Translation
#> 6 17 c("core".... -1 Translation
#> 7 17 c("17", .... -1 Translation
#> 8 17 c("core".... -1 Translation
#> 9 17 c("ENSE0.... -1 Translation
#> 10 17 c("Exon".... -1 Translation
#> 11 17 c(1, 1, .... -1 Translation
#> 12 17 c("ENSE0.... -1 Translation
#> 13 17 c(412229.... -1 <NA>
#> 14 17 c(1, 1, .... -1 Translation
#> 15 17 c("Exon".... -1 Translation
#> 16 17 c("core".... -1 <NA>
#> 17 17 c(412478.... -1 Translation
#> 18 17 c(412771.... -1 Translation
#> 19 17 c("Exon".... -1 Translation
#> 20 17 c("core".... -1 Translation
#> 21 17 c(412773.... -1 Translation
#> 22 17 c("core".... -1 Translation
#> 23 17 c("ENSE0.... -1 Translation
#> 24 17 c(1, 1, .... -1 Translation
#> 25 17 c("17", .... -1 Translation
#> 26 17 c("ENSE0.... -1 Translation
#> 27 17 c("ENSE0.... -1 Translation
#> 28 17 c("core".... -1 Translation
#> 29 17 c("ENSE0.... -1 Translation
#> 30 17 c("ENSE0.... -1 Translation
#> 31 17 c("ENSE0.... -1 Translation
#> Translation.db_type Translation.Parent Translation.id Translation.length
#> 1 core ENST00000357654 ENSP00000350283 1863
#> 2 core ENST00000468300 ENSP00000417148 699
#> 3 core ENST00000586385 ENSP00000465818 173
#> 4 core ENST00000591534 ENSP00000467329 354
#> 5 core ENST00000591849 ENSP00000465347 96
#> 6 core ENST00000493795 ENSP00000418775 1816
#> 7 core ENST00000471181 ENSP00000418960 1884
#> 8 core ENST00000461221 ENSP00000418548 63
#> 9 core ENST00000491747 ENSP00000420705 759
#> 10 core ENST00000484087 ENSP00000419481 498
#> 11 core ENST00000478531 ENSP00000420412 623
#> 12 core ENST00000493919 ENSP00000418819 572
#> 13 <NA> <NA> <NA> NA
#> 14 core ENST00000487825 ENSP00000418212 266
#> 15 core ENST00000461574 ENSP00000417241 242
#> 16 <NA> <NA> <NA> NA
#> 17 core ENST00000412061 ENSP00000397145 437
#> 18 core ENST00000470026 ENSP00000419274 649
#> 19 core ENST00000477152 ENSP00000419988 622
#> 20 core ENST00000492859 ENSP00000420253 59
#> 21 core ENST00000497488 ENSP00000418986 177
#> 22 core ENST00000494123 ENSP00000419103 473
#> 23 core ENST00000473961 ENSP00000420201 319
#> 24 core ENST00000476777 ENSP00000417554 222
#> 25 core ENST00000461798 ENSP00000417988 63
#> 26 core ENST00000489037 ENSP00000420781 98
#> 27 core ENST00000354071 ENSP00000326002 1598
#> 28 core ENST00000352993 ENSP00000312236 721
#> 29 core ENST00000346315 ENSP00000246907 1624
#> 30 core ENST00000351666 ENSP00000338007 680
#> 31 core ENST00000309486 ENSP00000310938 1567
#> Translation.end Translation.version Translation.start Translation.species
#> 1 41276113 3 41197695 human
#> 2 41276113 1 41197801 human
#> 3 41277202 1 41197695 human
#> 4 41226495 1 41197695 human
#> 5 41202109 1 41197695 human
#> 6 41258543 1 41197695 human
#> 7 41276113 2 41197695 human
#> 8 41276113 1 41256972 human
#> 9 41276113 2 41197695 human
#> 10 41256933 1 41215361 human
#> 11 41276113 1 41215361 human
#> 12 41258543 1 41215377 human
#> 13 NA NA NA <NA>
#> 14 41256933 1 41228505 human
#> 15 41243841 1 41228554 human
#> 16 NA NA NA <NA>
#> 17 41247883 3 41245587 human
#> 18 41276113 1 41245601 human
#> 19 41276113 1 41245603 human
#> 20 41276113 1 41262552 human
#> 21 41246659 1 41246129 human
#> 22 41276113 1 41246129 human
#> 23 41256908 1 41246187 human
#> 24 41276113 1 41247863 human
#> 25 41276113 1 41256972 human
#> 26 41276113 1 41256206 human
#> 27 41276113 6 41197695 human
#> 28 41276113 5 41197695 human
#> 29 41276113 4 41197695 human
#> 30 41276113 3 41197695 human
#> 31 41246659 4 41197695 human
#>
#> $species
#> [1] "human"
#>
#> $seq_region_name
#> [1] "17"
#>
#> $strand
#> [1] -1
#>