Query information from Ensembl
Usage
queryEnsemblByGene(gene, species = NULL, assembly = NULL)
queryEnsemblByEvent(event, species = NULL, assembly = NULL, data = NULL)Arguments
- gene
Character: gene
- species
Character: species (may be
NULLfor an Ensembl identifier)- assembly
Character: assembly version (may be NULL for an Ensembl identifier)
- event
Character: alternative splicing event
- data
Matrix or data frame: alternative splicing information
See also
Other functions to retrieve external information:
ensemblToUniprot(),
plotProtein(),
plotTranscripts()
Examples
queryEnsemblByGene("BRCA1", "human", "hg19")
#> $strand
#> [1] -1
#>
#> $seq_region_name
#> [1] "17"
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $end
#> [1] 41277500
#>
#> $Transcript
#> display_name db_type seq_region_name strand end id
#> 1 BRCA1-001 core 17 -1 41277387 ENST00000357654
#> 2 BRCA1-007 core 17 -1 41277468 ENST00000468300
#> 3 BRCA1-023 core 17 -1 41277346 ENST00000586385
#> 4 BRCA1-024 core 17 -1 41277346 ENST00000591534
#> 5 BRCA1-025 core 17 -1 41277346 ENST00000591849
#> 6 BRCA1-006 core 17 -1 41277419 ENST00000493795
#> 7 BRCA1-005 core 17 -1 41277500 ENST00000471181
#> 8 BRCA1-010 core 17 -1 41277305 ENST00000461221
#> 9 BRCA1-014 core 17 -1 41277373 ENST00000491747
#> 10 BRCA1-015 core 17 -1 41256933 ENST00000484087
#> 11 BRCA1-009 core 17 -1 41277376 ENST00000478531
#> 12 BRCA1-008 core 17 -1 41277419 ENST00000493919
#> 13 BRCA1-021 core 17 -1 41223083 ENST00000472490
#> 14 BRCA1-019 core 17 -1 41256933 ENST00000487825
#> 15 BRCA1-022 core 17 -1 41243841 ENST00000461574
#> 16 BRCA1-012 core 17 -1 41277332 ENST00000467274
#> 17 BRCA1-026 core 17 -1 41247883 ENST00000412061
#> 18 BRCA1-011 core 17 -1 41277340 ENST00000470026
#> 19 BRCA1-004 core 17 -1 41277381 ENST00000477152
#> 20 BRCA1-002 core 17 -1 41277317 ENST00000492859
#> 21 BRCA1-003 core 17 -1 41277317 ENST00000497488
#> 22 BRCA1-013 core 17 -1 41277467 ENST00000494123
#> 23 BRCA1-018 core 17 -1 41256908 ENST00000473961
#> 24 BRCA1-017 core 17 -1 41277370 ENST00000476777
#> 25 BRCA1-020 core 17 -1 41277387 ENST00000461798
#> 26 BRCA1-016 core 17 -1 41277338 ENST00000489037
#> 27 BRCA1-205 core 17 -1 41277500 ENST00000354071
#> 28 BRCA1-204 core 17 -1 41277500 ENST00000352993
#> 29 BRCA1-202 core 17 -1 41277468 ENST00000346315
#> 30 BRCA1-203 core 17 -1 41276132 ENST00000351666
#> 31 BRCA1-201 core 17 -1 41277468 ENST00000309486
#> assembly_name source Exon logic_name
#> 1 GRCh37 ensembl_havana c(412772.... ensembl_havana_transcript
#> 2 GRCh37 ensembl_havana c("Exon".... ensembl_havana_transcript
#> 3 GRCh37 havana c("GRCh3.... havana_homo_sapiens_37
#> 4 GRCh37 havana c("GRCh3.... havana_homo_sapiens_37
#> 5 GRCh37 havana c("ENSE0.... havana_homo_sapiens_37
#> 6 GRCh37 ensembl_havana c(412772.... ensembl_havana_transcript
#> 7 GRCh37 ensembl_havana c(412775.... ensembl_havana_transcript
#> 8 GRCh37 havana c("ENSE0.... havana_homo_sapiens_37
#> 9 GRCh37 havana c("GRCh3.... havana_homo_sapiens_37
#> 10 GRCh37 havana c(412568.... havana_homo_sapiens_37
#> 11 GRCh37 havana c(412772.... havana_homo_sapiens_37
#> 12 GRCh37 havana c("ENSE0.... havana_homo_sapiens_37
#> 13 GRCh37 havana c(1, 1),.... havana_homo_sapiens_37
#> 14 GRCh37 havana c("GRCh3.... havana_homo_sapiens_37
#> 15 GRCh37 havana c("GRCh3.... havana_homo_sapiens_37
#> 16 GRCh37 havana c("GRCh3.... havana_homo_sapiens_37
#> 17 GRCh37 havana c(-1, -1.... havana_homo_sapiens_37
#> 18 GRCh37 havana c("human.... havana_homo_sapiens_37
#> 19 GRCh37 havana c("17", .... havana_homo_sapiens_37
#> 20 GRCh37 havana c("Exon".... havana_homo_sapiens_37
#> 21 GRCh37 havana c("GRCh3.... havana_homo_sapiens_37
#> 22 GRCh37 havana c("Exon".... havana_homo_sapiens_37
#> 23 GRCh37 havana c("GRCh3.... havana_homo_sapiens_37
#> 24 GRCh37 havana c(412772.... havana_homo_sapiens_37
#> 25 GRCh37 havana c(412772.... havana_homo_sapiens_37
#> 26 GRCh37 havana c(1, 1, .... havana_homo_sapiens_37
#> 27 GRCh37 ensembl c(412772.... ensembl_homo_sapiens_37
#> 28 GRCh37 ensembl c(1, 1, .... ensembl_homo_sapiens_37
#> 29 GRCh37 ensembl c(412772.... ensembl_homo_sapiens_37
#> 30 GRCh37 ensembl c("GRCh3.... ensembl_homo_sapiens_37
#> 31 GRCh37 ensembl c("GRCh3.... ensembl_homo_sapiens_37
#> object_type version species start biotype Parent
#> 1 Transcript 3 human 41196312 protein_coding ENSG00000012048
#> 2 Transcript 1 human 41196822 protein_coding ENSG00000012048
#> 3 Transcript 1 human 41197580 protein_coding ENSG00000012048
#> 4 Transcript 1 human 41197580 protein_coding ENSG00000012048
#> 5 Transcript 1 human 41197580 protein_coding ENSG00000012048
#> 6 Transcript 1 human 41197646 protein_coding ENSG00000012048
#> 7 Transcript 2 human 41197646 protein_coding ENSG00000012048
#> 8 Transcript 1 human 41197695 nonsense_mediated_decay ENSG00000012048
#> 9 Transcript 2 human 41197695 protein_coding ENSG00000012048
#> 10 Transcript 1 human 41215361 protein_coding ENSG00000012048
#> 11 Transcript 1 human 41215361 protein_coding ENSG00000012048
#> 12 Transcript 1 human 41215377 protein_coding ENSG00000012048
#> 13 Transcript 1 human 41219291 retained_intron ENSG00000012048
#> 14 Transcript 1 human 41228505 protein_coding ENSG00000012048
#> 15 Transcript 1 human 41228554 protein_coding ENSG00000012048
#> 16 Transcript 1 human 41243115 retained_intron ENSG00000012048
#> 17 Transcript 3 human 41245587 non_stop_decay ENSG00000012048
#> 18 Transcript 1 human 41245601 protein_coding ENSG00000012048
#> 19 Transcript 1 human 41245603 protein_coding ENSG00000012048
#> 20 Transcript 1 human 41246129 nonsense_mediated_decay ENSG00000012048
#> 21 Transcript 1 human 41246129 protein_coding ENSG00000012048
#> 22 Transcript 1 human 41246129 protein_coding ENSG00000012048
#> 23 Transcript 1 human 41246187 protein_coding ENSG00000012048
#> 24 Transcript 1 human 41247863 protein_coding ENSG00000012048
#> 25 Transcript 1 human 41251848 nonsense_mediated_decay ENSG00000012048
#> 26 Transcript 1 human 41256206 protein_coding ENSG00000012048
#> 27 Transcript 3 human 41196313 protein_coding ENSG00000012048
#> 28 Transcript 3 human 41196313 protein_coding ENSG00000012048
#> 29 Transcript 3 human 41196313 protein_coding ENSG00000012048
#> 30 Transcript 3 human 41196313 protein_coding ENSG00000012048
#> 31 Transcript 4 human 41196313 protein_coding ENSG00000012048
#> is_canonical Translation.Parent Translation.length Translation.start
#> 1 0 ENST00000357654 1863 41197695
#> 2 0 ENST00000468300 699 41197801
#> 3 0 ENST00000586385 173 41197695
#> 4 0 ENST00000591534 354 41197695
#> 5 0 ENST00000591849 96 41197695
#> 6 0 ENST00000493795 1816 41197695
#> 7 1 ENST00000471181 1884 41197695
#> 8 0 ENST00000461221 63 41256972
#> 9 0 ENST00000491747 759 41197695
#> 10 0 ENST00000484087 498 41215361
#> 11 0 ENST00000478531 623 41215361
#> 12 0 ENST00000493919 572 41215377
#> 13 0 <NA> NA NA
#> 14 0 ENST00000487825 266 41228505
#> 15 0 ENST00000461574 242 41228554
#> 16 0 <NA> NA NA
#> 17 0 ENST00000412061 437 41245587
#> 18 0 ENST00000470026 649 41245601
#> 19 0 ENST00000477152 622 41245603
#> 20 0 ENST00000492859 59 41262552
#> 21 0 ENST00000497488 177 41246129
#> 22 0 ENST00000494123 473 41246129
#> 23 0 ENST00000473961 319 41246187
#> 24 0 ENST00000476777 222 41247863
#> 25 0 ENST00000461798 63 41256972
#> 26 0 ENST00000489037 98 41256206
#> 27 0 ENST00000354071 1598 41197695
#> 28 0 ENST00000352993 721 41197695
#> 29 0 ENST00000346315 1624 41197695
#> 30 0 ENST00000351666 680 41197695
#> 31 0 ENST00000309486 1567 41197695
#> Translation.id Translation.end Translation.species Translation.version
#> 1 ENSP00000350283 41276113 human 3
#> 2 ENSP00000417148 41276113 human 1
#> 3 ENSP00000465818 41277202 human 1
#> 4 ENSP00000467329 41226495 human 1
#> 5 ENSP00000465347 41202109 human 1
#> 6 ENSP00000418775 41258543 human 1
#> 7 ENSP00000418960 41276113 human 2
#> 8 ENSP00000418548 41276113 human 1
#> 9 ENSP00000420705 41276113 human 2
#> 10 ENSP00000419481 41256933 human 1
#> 11 ENSP00000420412 41276113 human 1
#> 12 ENSP00000418819 41258543 human 1
#> 13 <NA> NA <NA> NA
#> 14 ENSP00000418212 41256933 human 1
#> 15 ENSP00000417241 41243841 human 1
#> 16 <NA> NA <NA> NA
#> 17 ENSP00000397145 41247883 human 3
#> 18 ENSP00000419274 41276113 human 1
#> 19 ENSP00000419988 41276113 human 1
#> 20 ENSP00000420253 41276113 human 1
#> 21 ENSP00000418986 41246659 human 1
#> 22 ENSP00000419103 41276113 human 1
#> 23 ENSP00000420201 41256908 human 1
#> 24 ENSP00000417554 41276113 human 1
#> 25 ENSP00000417988 41276113 human 1
#> 26 ENSP00000420781 41276113 human 1
#> 27 ENSP00000326002 41276113 human 6
#> 28 ENSP00000312236 41276113 human 5
#> 29 ENSP00000246907 41276113 human 4
#> 30 ENSP00000338007 41276113 human 3
#> 31 ENSP00000310938 41246659 human 4
#> Translation.object_type Translation.db_type
#> 1 Translation core
#> 2 Translation core
#> 3 Translation core
#> 4 Translation core
#> 5 Translation core
#> 6 Translation core
#> 7 Translation core
#> 8 Translation core
#> 9 Translation core
#> 10 Translation core
#> 11 Translation core
#> 12 Translation core
#> 13 <NA> <NA>
#> 14 Translation core
#> 15 Translation core
#> 16 <NA> <NA>
#> 17 Translation core
#> 18 Translation core
#> 19 Translation core
#> 20 Translation core
#> 21 Translation core
#> 22 Translation core
#> 23 Translation core
#> 24 Translation core
#> 25 Translation core
#> 26 Translation core
#> 27 Translation core
#> 28 Translation core
#> 29 Translation core
#> 30 Translation core
#> 31 Translation core
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $db_type
#> [1] "core"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $species
#> [1] "human"
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $object_type
#> [1] "Gene"
#>
#> $version
#> [1] 15
#>
#> $start
#> [1] 41196312
#>
#> $biotype
#> [1] "protein_coding"
#>
queryEnsemblByGene("ENSG00000139618")
#> $species
#> [1] "homo_sapiens"
#>
#> $end
#> [1] 32973805
#>
#> $seq_region_name
#> [1] "13"
#>
#> $canonical_transcript
#> [1] "ENST00000544455.1"
#>
#> $start
#> [1] 32889611
#>
#> $Transcript
#> end seq_region_name species Exon display_name version
#> 1 32973347 13 homo_sapiens c(328896.... BRCA2-001 3
#> 2 32907428 13 homo_sapiens c(328896.... BRCA2-003 2
#> 3 32953632 13 homo_sapiens c("Exon".... BRCA2-005 1
#> 4 32972409 13 homo_sapiens c("Exon".... BRCA2-002 1
#> 5 32972585 13 homo_sapiens c("ENSE0.... BRCA2-006 1
#> 6 32973805 13 homo_sapiens c(328896.... BRCA2-201 1
#> id Parent start logic_name db_type
#> 1 ENST00000380152 ENSG00000139618 32889611 ensembl_havana_transcript core
#> 2 ENST00000530893 ENSG00000139618 32889642 havana_homo_sapiens_37 core
#> 3 ENST00000528762 ENSG00000139618 32945108 havana_homo_sapiens_37 core
#> 4 ENST00000470094 ENSG00000139618 32953977 havana_homo_sapiens_37 core
#> 5 ENST00000533776 ENSG00000139618 32970946 havana_homo_sapiens_37 core
#> 6 ENST00000544455 ENSG00000139618 32889617 ensembl_homo_sapiens_37 core
#> object_type is_canonical strand assembly_name source
#> 1 Transcript 0 1 GRCh37 ensembl_havana
#> 2 Transcript 0 1 GRCh37 havana
#> 3 Transcript 0 1 GRCh37 havana
#> 4 Transcript 0 1 GRCh37 havana
#> 5 Transcript 0 1 GRCh37 havana
#> 6 Transcript 1 1 GRCh37 ensembl
#> biotype Translation.length Translation.id
#> 1 protein_coding 3418 ENSP00000369497
#> 2 protein_coding 481 ENSP00000435699
#> 3 nonsense_mediated_decay 64 ENSP00000433168
#> 4 nonsense_mediated_decay 186 ENSP00000434898
#> 5 retained_intron NA <NA>
#> 6 protein_coding 3418 ENSP00000439902
#> Translation.version Translation.Parent Translation.start Translation.end
#> 1 3 ENST00000380152 32890598 32972907
#> 2 2 ENST00000530893 32899266 32907428
#> 3 1 ENST00000528762 32945108 32950807
#> 4 1 ENST00000470094 32953977 32970229
#> 5 NA <NA> NA NA
#> 6 1 ENST00000544455 32890598 32972907
#> Translation.species Translation.db_type Translation.object_type
#> 1 homo_sapiens core Translation
#> 2 homo_sapiens core Translation
#> 3 homo_sapiens core Translation
#> 4 homo_sapiens core Translation
#> 5 <NA> <NA> <NA>
#> 6 homo_sapiens core Translation
#>
#> $display_name
#> [1] "BRCA2"
#>
#> $id
#> [1] "ENSG00000139618"
#>
#> $version
#> [1] 10
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $db_type
#> [1] "core"
#>
#> $object_type
#> [1] "Gene"
#>
#> $description
#> [1] "breast cancer 2, early onset [Source:HGNC Symbol;Acc:1101]"
#>
#> $strand
#> [1] 1
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $biotype
#> [1] "protein_coding"
#>
event <- "SE_17_-_41251792_41249306_41249261_41246877_BRCA1"
queryEnsemblByEvent(event, species="human", assembly="hg19")
#> $start
#> [1] 41196312
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $species
#> [1] "human"
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $version
#> [1] 15
#>
#> $end
#> [1] 41277500
#>
#> $object_type
#> [1] "Gene"
#>
#> $strand
#> [1] -1
#>
#> $Transcript
#> strand object_type display_name id seq_region_name db_type
#> 1 -1 Transcript BRCA1-001 ENST00000357654 17 core
#> 2 -1 Transcript BRCA1-007 ENST00000468300 17 core
#> 3 -1 Transcript BRCA1-023 ENST00000586385 17 core
#> 4 -1 Transcript BRCA1-024 ENST00000591534 17 core
#> 5 -1 Transcript BRCA1-025 ENST00000591849 17 core
#> 6 -1 Transcript BRCA1-006 ENST00000493795 17 core
#> 7 -1 Transcript BRCA1-005 ENST00000471181 17 core
#> 8 -1 Transcript BRCA1-010 ENST00000461221 17 core
#> 9 -1 Transcript BRCA1-014 ENST00000491747 17 core
#> 10 -1 Transcript BRCA1-015 ENST00000484087 17 core
#> 11 -1 Transcript BRCA1-009 ENST00000478531 17 core
#> 12 -1 Transcript BRCA1-008 ENST00000493919 17 core
#> 13 -1 Transcript BRCA1-021 ENST00000472490 17 core
#> 14 -1 Transcript BRCA1-019 ENST00000487825 17 core
#> 15 -1 Transcript BRCA1-022 ENST00000461574 17 core
#> 16 -1 Transcript BRCA1-012 ENST00000467274 17 core
#> 17 -1 Transcript BRCA1-026 ENST00000412061 17 core
#> 18 -1 Transcript BRCA1-011 ENST00000470026 17 core
#> 19 -1 Transcript BRCA1-004 ENST00000477152 17 core
#> 20 -1 Transcript BRCA1-002 ENST00000492859 17 core
#> 21 -1 Transcript BRCA1-003 ENST00000497488 17 core
#> 22 -1 Transcript BRCA1-013 ENST00000494123 17 core
#> 23 -1 Transcript BRCA1-018 ENST00000473961 17 core
#> 24 -1 Transcript BRCA1-017 ENST00000476777 17 core
#> 25 -1 Transcript BRCA1-020 ENST00000461798 17 core
#> 26 -1 Transcript BRCA1-016 ENST00000489037 17 core
#> 27 -1 Transcript BRCA1-205 ENST00000354071 17 core
#> 28 -1 Transcript BRCA1-204 ENST00000352993 17 core
#> 29 -1 Transcript BRCA1-202 ENST00000346315 17 core
#> 30 -1 Transcript BRCA1-203 ENST00000351666 17 core
#> 31 -1 Transcript BRCA1-201 ENST00000309486 17 core
#> start source logic_name Exon
#> 1 41196312 ensembl_havana ensembl_havana_transcript c("17", ....
#> 2 41196822 ensembl_havana ensembl_havana_transcript c("GRCh3....
#> 3 41197580 havana havana_homo_sapiens_37 c("17", ....
#> 4 41197580 havana havana_homo_sapiens_37 c("human....
#> 5 41197580 havana havana_homo_sapiens_37 c("human....
#> 6 41197646 ensembl_havana ensembl_havana_transcript c(1, 1, ....
#> 7 41197646 ensembl_havana ensembl_havana_transcript c("human....
#> 8 41197695 havana havana_homo_sapiens_37 c("ENSE0....
#> 9 41197695 havana havana_homo_sapiens_37 c(1, 1, ....
#> 10 41215361 havana havana_homo_sapiens_37 c("GRCh3....
#> 11 41215361 havana havana_homo_sapiens_37 c("ENSE0....
#> 12 41215377 havana havana_homo_sapiens_37 c("human....
#> 13 41219291 havana havana_homo_sapiens_37 c("human....
#> 14 41228505 havana havana_homo_sapiens_37 c("core"....
#> 15 41228554 havana havana_homo_sapiens_37 c(412438....
#> 16 41243115 havana havana_homo_sapiens_37 c("Exon"....
#> 17 41245587 havana havana_homo_sapiens_37 c("human....
#> 18 41245601 havana havana_homo_sapiens_37 c("human....
#> 19 41245603 havana havana_homo_sapiens_37 c("GRCh3....
#> 20 41246129 havana havana_homo_sapiens_37 c("human....
#> 21 41246129 havana havana_homo_sapiens_37 c("17", ....
#> 22 41246129 havana havana_homo_sapiens_37 c(412772....
#> 23 41246187 havana havana_homo_sapiens_37 c(-1, -1....
#> 24 41247863 havana havana_homo_sapiens_37 c("GRCh3....
#> 25 41251848 havana havana_homo_sapiens_37 c("human....
#> 26 41256206 havana havana_homo_sapiens_37 c("human....
#> 27 41196313 ensembl ensembl_homo_sapiens_37 c(412772....
#> 28 41196313 ensembl ensembl_homo_sapiens_37 c("human....
#> 29 41196313 ensembl ensembl_homo_sapiens_37 c("human....
#> 30 41196313 ensembl ensembl_homo_sapiens_37 c(412760....
#> 31 41196313 ensembl ensembl_homo_sapiens_37 c("core"....
#> Translation.species Translation.object_type Translation.start
#> 1 human Translation 41197695
#> 2 human Translation 41197801
#> 3 human Translation 41197695
#> 4 human Translation 41197695
#> 5 human Translation 41197695
#> 6 human Translation 41197695
#> 7 human Translation 41197695
#> 8 human Translation 41256972
#> 9 human Translation 41197695
#> 10 human Translation 41215361
#> 11 human Translation 41215361
#> 12 human Translation 41215377
#> 13 <NA> <NA> NA
#> 14 human Translation 41228505
#> 15 human Translation 41228554
#> 16 <NA> <NA> NA
#> 17 human Translation 41245587
#> 18 human Translation 41245601
#> 19 human Translation 41245603
#> 20 human Translation 41262552
#> 21 human Translation 41246129
#> 22 human Translation 41246129
#> 23 human Translation 41246187
#> 24 human Translation 41247863
#> 25 human Translation 41256972
#> 26 human Translation 41256206
#> 27 human Translation 41197695
#> 28 human Translation 41197695
#> 29 human Translation 41197695
#> 30 human Translation 41197695
#> 31 human Translation 41197695
#> Translation.length Translation.end Translation.version Translation.db_type
#> 1 1863 41276113 3 core
#> 2 699 41276113 1 core
#> 3 173 41277202 1 core
#> 4 354 41226495 1 core
#> 5 96 41202109 1 core
#> 6 1816 41258543 1 core
#> 7 1884 41276113 2 core
#> 8 63 41276113 1 core
#> 9 759 41276113 2 core
#> 10 498 41256933 1 core
#> 11 623 41276113 1 core
#> 12 572 41258543 1 core
#> 13 NA NA NA <NA>
#> 14 266 41256933 1 core
#> 15 242 41243841 1 core
#> 16 NA NA NA <NA>
#> 17 437 41247883 3 core
#> 18 649 41276113 1 core
#> 19 622 41276113 1 core
#> 20 59 41276113 1 core
#> 21 177 41246659 1 core
#> 22 473 41276113 1 core
#> 23 319 41256908 1 core
#> 24 222 41276113 1 core
#> 25 63 41276113 1 core
#> 26 98 41276113 1 core
#> 27 1598 41276113 6 core
#> 28 721 41276113 5 core
#> 29 1624 41276113 4 core
#> 30 680 41276113 3 core
#> 31 1567 41246659 4 core
#> Translation.id Translation.Parent species assembly_name Parent
#> 1 ENSP00000350283 ENST00000357654 human GRCh37 ENSG00000012048
#> 2 ENSP00000417148 ENST00000468300 human GRCh37 ENSG00000012048
#> 3 ENSP00000465818 ENST00000586385 human GRCh37 ENSG00000012048
#> 4 ENSP00000467329 ENST00000591534 human GRCh37 ENSG00000012048
#> 5 ENSP00000465347 ENST00000591849 human GRCh37 ENSG00000012048
#> 6 ENSP00000418775 ENST00000493795 human GRCh37 ENSG00000012048
#> 7 ENSP00000418960 ENST00000471181 human GRCh37 ENSG00000012048
#> 8 ENSP00000418548 ENST00000461221 human GRCh37 ENSG00000012048
#> 9 ENSP00000420705 ENST00000491747 human GRCh37 ENSG00000012048
#> 10 ENSP00000419481 ENST00000484087 human GRCh37 ENSG00000012048
#> 11 ENSP00000420412 ENST00000478531 human GRCh37 ENSG00000012048
#> 12 ENSP00000418819 ENST00000493919 human GRCh37 ENSG00000012048
#> 13 <NA> <NA> human GRCh37 ENSG00000012048
#> 14 ENSP00000418212 ENST00000487825 human GRCh37 ENSG00000012048
#> 15 ENSP00000417241 ENST00000461574 human GRCh37 ENSG00000012048
#> 16 <NA> <NA> human GRCh37 ENSG00000012048
#> 17 ENSP00000397145 ENST00000412061 human GRCh37 ENSG00000012048
#> 18 ENSP00000419274 ENST00000470026 human GRCh37 ENSG00000012048
#> 19 ENSP00000419988 ENST00000477152 human GRCh37 ENSG00000012048
#> 20 ENSP00000420253 ENST00000492859 human GRCh37 ENSG00000012048
#> 21 ENSP00000418986 ENST00000497488 human GRCh37 ENSG00000012048
#> 22 ENSP00000419103 ENST00000494123 human GRCh37 ENSG00000012048
#> 23 ENSP00000420201 ENST00000473961 human GRCh37 ENSG00000012048
#> 24 ENSP00000417554 ENST00000476777 human GRCh37 ENSG00000012048
#> 25 ENSP00000417988 ENST00000461798 human GRCh37 ENSG00000012048
#> 26 ENSP00000420781 ENST00000489037 human GRCh37 ENSG00000012048
#> 27 ENSP00000326002 ENST00000354071 human GRCh37 ENSG00000012048
#> 28 ENSP00000312236 ENST00000352993 human GRCh37 ENSG00000012048
#> 29 ENSP00000246907 ENST00000346315 human GRCh37 ENSG00000012048
#> 30 ENSP00000338007 ENST00000351666 human GRCh37 ENSG00000012048
#> 31 ENSP00000310938 ENST00000309486 human GRCh37 ENSG00000012048
#> is_canonical biotype version end
#> 1 0 protein_coding 3 41277387
#> 2 0 protein_coding 1 41277468
#> 3 0 protein_coding 1 41277346
#> 4 0 protein_coding 1 41277346
#> 5 0 protein_coding 1 41277346
#> 6 0 protein_coding 1 41277419
#> 7 1 protein_coding 2 41277500
#> 8 0 nonsense_mediated_decay 1 41277305
#> 9 0 protein_coding 2 41277373
#> 10 0 protein_coding 1 41256933
#> 11 0 protein_coding 1 41277376
#> 12 0 protein_coding 1 41277419
#> 13 0 retained_intron 1 41223083
#> 14 0 protein_coding 1 41256933
#> 15 0 protein_coding 1 41243841
#> 16 0 retained_intron 1 41277332
#> 17 0 non_stop_decay 3 41247883
#> 18 0 protein_coding 1 41277340
#> 19 0 protein_coding 1 41277381
#> 20 0 nonsense_mediated_decay 1 41277317
#> 21 0 protein_coding 1 41277317
#> 22 0 protein_coding 1 41277467
#> 23 0 protein_coding 1 41256908
#> 24 0 protein_coding 1 41277370
#> 25 0 nonsense_mediated_decay 1 41277387
#> 26 0 protein_coding 1 41277338
#> 27 0 protein_coding 3 41277500
#> 28 0 protein_coding 3 41277500
#> 29 0 protein_coding 3 41277468
#> 30 0 protein_coding 3 41276132
#> 31 0 protein_coding 4 41277468
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $seq_region_name
#> [1] "17"
#>
#> $db_type
#> [1] "core"
#>