Query information from Ensembl
Usage
queryEnsemblByGene(gene, species = NULL, assembly = NULL)
queryEnsemblByEvent(event, species = NULL, assembly = NULL, data = NULL)Arguments
- gene
Character: gene
- species
Character: species (may be
NULLfor an Ensembl identifier)- assembly
Character: assembly version (may be NULL for an Ensembl identifier)
- event
Character: alternative splicing event
- data
Matrix or data frame: alternative splicing information
See also
Other functions to retrieve external information:
ensemblToUniprot(),
plotProtein(),
plotTranscripts()
Examples
queryEnsemblByGene("BRCA1", "human", "hg19")
#> $biotype
#> [1] "protein_coding"
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $Transcript
#> end db_type is_canonical assembly_name start species source
#> 1 41277387 core 0 GRCh37 41196312 human ensembl_havana
#> 2 41277468 core 0 GRCh37 41196822 human ensembl_havana
#> 3 41277346 core 0 GRCh37 41197580 human havana
#> 4 41277346 core 0 GRCh37 41197580 human havana
#> 5 41277346 core 0 GRCh37 41197580 human havana
#> 6 41277419 core 0 GRCh37 41197646 human ensembl_havana
#> 7 41277500 core 1 GRCh37 41197646 human ensembl_havana
#> 8 41277305 core 0 GRCh37 41197695 human havana
#> 9 41277373 core 0 GRCh37 41197695 human havana
#> 10 41256933 core 0 GRCh37 41215361 human havana
#> 11 41277376 core 0 GRCh37 41215361 human havana
#> 12 41277419 core 0 GRCh37 41215377 human havana
#> 13 41223083 core 0 GRCh37 41219291 human havana
#> 14 41256933 core 0 GRCh37 41228505 human havana
#> 15 41243841 core 0 GRCh37 41228554 human havana
#> 16 41277332 core 0 GRCh37 41243115 human havana
#> 17 41247883 core 0 GRCh37 41245587 human havana
#> 18 41277340 core 0 GRCh37 41245601 human havana
#> 19 41277381 core 0 GRCh37 41245603 human havana
#> 20 41277317 core 0 GRCh37 41246129 human havana
#> 21 41277317 core 0 GRCh37 41246129 human havana
#> 22 41277467 core 0 GRCh37 41246129 human havana
#> 23 41256908 core 0 GRCh37 41246187 human havana
#> 24 41277370 core 0 GRCh37 41247863 human havana
#> 25 41277387 core 0 GRCh37 41251848 human havana
#> 26 41277338 core 0 GRCh37 41256206 human havana
#> 27 41277500 core 0 GRCh37 41196313 human ensembl
#> 28 41277500 core 0 GRCh37 41196313 human ensembl
#> 29 41277468 core 0 GRCh37 41196313 human ensembl
#> 30 41276132 core 0 GRCh37 41196313 human ensembl
#> 31 41277468 core 0 GRCh37 41196313 human ensembl
#> version strand object_type Exon logic_name
#> 1 3 -1 Transcript c(-1, -1.... ensembl_havana_transcript
#> 2 1 -1 Transcript c("ENSE0.... ensembl_havana_transcript
#> 3 1 -1 Transcript c(-1, -1.... havana_homo_sapiens_37
#> 4 1 -1 Transcript c(412773.... havana_homo_sapiens_37
#> 5 1 -1 Transcript c(-1, -1.... havana_homo_sapiens_37
#> 6 1 -1 Transcript c("Exon".... ensembl_havana_transcript
#> 7 2 -1 Transcript c("Exon".... ensembl_havana_transcript
#> 8 1 -1 Transcript c("Exon".... havana_homo_sapiens_37
#> 9 2 -1 Transcript c(1, 1, .... havana_homo_sapiens_37
#> 10 1 -1 Transcript c("ENSE0.... havana_homo_sapiens_37
#> 11 1 -1 Transcript c("Exon".... havana_homo_sapiens_37
#> 12 1 -1 Transcript c(412774.... havana_homo_sapiens_37
#> 13 1 -1 Transcript c("ENSE0.... havana_homo_sapiens_37
#> 14 1 -1 Transcript c("human.... havana_homo_sapiens_37
#> 15 1 -1 Transcript c(-1, -1.... havana_homo_sapiens_37
#> 16 1 -1 Transcript c("Exon".... havana_homo_sapiens_37
#> 17 3 -1 Transcript c(412478.... havana_homo_sapiens_37
#> 18 1 -1 Transcript c("Exon".... havana_homo_sapiens_37
#> 19 1 -1 Transcript c("17", .... havana_homo_sapiens_37
#> 20 1 -1 Transcript c(412773.... havana_homo_sapiens_37
#> 21 1 -1 Transcript c(412773.... havana_homo_sapiens_37
#> 22 1 -1 Transcript c("GRCh3.... havana_homo_sapiens_37
#> 23 1 -1 Transcript c("GRCh3.... havana_homo_sapiens_37
#> 24 1 -1 Transcript c("Exon".... havana_homo_sapiens_37
#> 25 1 -1 Transcript c(412772.... havana_homo_sapiens_37
#> 26 1 -1 Transcript c(-1, -1.... havana_homo_sapiens_37
#> 27 3 -1 Transcript c("Exon".... ensembl_homo_sapiens_37
#> 28 3 -1 Transcript c("GRCh3.... ensembl_homo_sapiens_37
#> 29 3 -1 Transcript c("Exon".... ensembl_homo_sapiens_37
#> 30 3 -1 Transcript c(-1, -1.... ensembl_homo_sapiens_37
#> 31 4 -1 Transcript c(412774.... ensembl_homo_sapiens_37
#> seq_region_name Translation.db_type Translation.end Translation.species
#> 1 17 core 41276113 human
#> 2 17 core 41276113 human
#> 3 17 core 41277202 human
#> 4 17 core 41226495 human
#> 5 17 core 41202109 human
#> 6 17 core 41258543 human
#> 7 17 core 41276113 human
#> 8 17 core 41276113 human
#> 9 17 core 41276113 human
#> 10 17 core 41256933 human
#> 11 17 core 41276113 human
#> 12 17 core 41258543 human
#> 13 17 <NA> NA <NA>
#> 14 17 core 41256933 human
#> 15 17 core 41243841 human
#> 16 17 <NA> NA <NA>
#> 17 17 core 41247883 human
#> 18 17 core 41276113 human
#> 19 17 core 41276113 human
#> 20 17 core 41276113 human
#> 21 17 core 41246659 human
#> 22 17 core 41276113 human
#> 23 17 core 41256908 human
#> 24 17 core 41276113 human
#> 25 17 core 41276113 human
#> 26 17 core 41276113 human
#> 27 17 core 41276113 human
#> 28 17 core 41276113 human
#> 29 17 core 41276113 human
#> 30 17 core 41276113 human
#> 31 17 core 41246659 human
#> Translation.version Translation.start Translation.Parent
#> 1 3 41197695 ENST00000357654
#> 2 1 41197801 ENST00000468300
#> 3 1 41197695 ENST00000586385
#> 4 1 41197695 ENST00000591534
#> 5 1 41197695 ENST00000591849
#> 6 1 41197695 ENST00000493795
#> 7 2 41197695 ENST00000471181
#> 8 1 41256972 ENST00000461221
#> 9 2 41197695 ENST00000491747
#> 10 1 41215361 ENST00000484087
#> 11 1 41215361 ENST00000478531
#> 12 1 41215377 ENST00000493919
#> 13 NA NA <NA>
#> 14 1 41228505 ENST00000487825
#> 15 1 41228554 ENST00000461574
#> 16 NA NA <NA>
#> 17 3 41245587 ENST00000412061
#> 18 1 41245601 ENST00000470026
#> 19 1 41245603 ENST00000477152
#> 20 1 41262552 ENST00000492859
#> 21 1 41246129 ENST00000497488
#> 22 1 41246129 ENST00000494123
#> 23 1 41246187 ENST00000473961
#> 24 1 41247863 ENST00000476777
#> 25 1 41256972 ENST00000461798
#> 26 1 41256206 ENST00000489037
#> 27 6 41197695 ENST00000354071
#> 28 5 41197695 ENST00000352993
#> 29 4 41197695 ENST00000346315
#> 30 3 41197695 ENST00000351666
#> 31 4 41197695 ENST00000309486
#> Translation.object_type Translation.id Translation.length display_name
#> 1 Translation ENSP00000350283 1863 BRCA1-001
#> 2 Translation ENSP00000417148 699 BRCA1-007
#> 3 Translation ENSP00000465818 173 BRCA1-023
#> 4 Translation ENSP00000467329 354 BRCA1-024
#> 5 Translation ENSP00000465347 96 BRCA1-025
#> 6 Translation ENSP00000418775 1816 BRCA1-006
#> 7 Translation ENSP00000418960 1884 BRCA1-005
#> 8 Translation ENSP00000418548 63 BRCA1-010
#> 9 Translation ENSP00000420705 759 BRCA1-014
#> 10 Translation ENSP00000419481 498 BRCA1-015
#> 11 Translation ENSP00000420412 623 BRCA1-009
#> 12 Translation ENSP00000418819 572 BRCA1-008
#> 13 <NA> <NA> NA BRCA1-021
#> 14 Translation ENSP00000418212 266 BRCA1-019
#> 15 Translation ENSP00000417241 242 BRCA1-022
#> 16 <NA> <NA> NA BRCA1-012
#> 17 Translation ENSP00000397145 437 BRCA1-026
#> 18 Translation ENSP00000419274 649 BRCA1-011
#> 19 Translation ENSP00000419988 622 BRCA1-004
#> 20 Translation ENSP00000420253 59 BRCA1-002
#> 21 Translation ENSP00000418986 177 BRCA1-003
#> 22 Translation ENSP00000419103 473 BRCA1-013
#> 23 Translation ENSP00000420201 319 BRCA1-018
#> 24 Translation ENSP00000417554 222 BRCA1-017
#> 25 Translation ENSP00000417988 63 BRCA1-020
#> 26 Translation ENSP00000420781 98 BRCA1-016
#> 27 Translation ENSP00000326002 1598 BRCA1-205
#> 28 Translation ENSP00000312236 721 BRCA1-204
#> 29 Translation ENSP00000246907 1624 BRCA1-202
#> 30 Translation ENSP00000338007 680 BRCA1-203
#> 31 Translation ENSP00000310938 1567 BRCA1-201
#> Parent biotype id
#> 1 ENSG00000012048 protein_coding ENST00000357654
#> 2 ENSG00000012048 protein_coding ENST00000468300
#> 3 ENSG00000012048 protein_coding ENST00000586385
#> 4 ENSG00000012048 protein_coding ENST00000591534
#> 5 ENSG00000012048 protein_coding ENST00000591849
#> 6 ENSG00000012048 protein_coding ENST00000493795
#> 7 ENSG00000012048 protein_coding ENST00000471181
#> 8 ENSG00000012048 nonsense_mediated_decay ENST00000461221
#> 9 ENSG00000012048 protein_coding ENST00000491747
#> 10 ENSG00000012048 protein_coding ENST00000484087
#> 11 ENSG00000012048 protein_coding ENST00000478531
#> 12 ENSG00000012048 protein_coding ENST00000493919
#> 13 ENSG00000012048 retained_intron ENST00000472490
#> 14 ENSG00000012048 protein_coding ENST00000487825
#> 15 ENSG00000012048 protein_coding ENST00000461574
#> 16 ENSG00000012048 retained_intron ENST00000467274
#> 17 ENSG00000012048 non_stop_decay ENST00000412061
#> 18 ENSG00000012048 protein_coding ENST00000470026
#> 19 ENSG00000012048 protein_coding ENST00000477152
#> 20 ENSG00000012048 nonsense_mediated_decay ENST00000492859
#> 21 ENSG00000012048 protein_coding ENST00000497488
#> 22 ENSG00000012048 protein_coding ENST00000494123
#> 23 ENSG00000012048 protein_coding ENST00000473961
#> 24 ENSG00000012048 protein_coding ENST00000476777
#> 25 ENSG00000012048 nonsense_mediated_decay ENST00000461798
#> 26 ENSG00000012048 protein_coding ENST00000489037
#> 27 ENSG00000012048 protein_coding ENST00000354071
#> 28 ENSG00000012048 protein_coding ENST00000352993
#> 29 ENSG00000012048 protein_coding ENST00000346315
#> 30 ENSG00000012048 protein_coding ENST00000351666
#> 31 ENSG00000012048 protein_coding ENST00000309486
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $seq_region_name
#> [1] "17"
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $strand
#> [1] -1
#>
#> $object_type
#> [1] "Gene"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $end
#> [1] 41277500
#>
#> $db_type
#> [1] "core"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $start
#> [1] 41196312
#>
#> $species
#> [1] "human"
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $version
#> [1] 15
#>
queryEnsemblByGene("ENSG00000139618")
#> $display_name
#> [1] "BRCA2"
#>
#> $strand
#> [1] 1
#>
#> $seq_region_name
#> [1] "13"
#>
#> $start
#> [1] 32889611
#>
#> $canonical_transcript
#> [1] "ENST00000544455.1"
#>
#> $description
#> [1] "breast cancer 2, early onset [Source:HGNC Symbol;Acc:1101]"
#>
#> $object_type
#> [1] "Gene"
#>
#> $id
#> [1] "ENSG00000139618"
#>
#> $end
#> [1] 32973805
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $Transcript
#> source assembly_name Exon biotype
#> 1 ensembl_havana GRCh37 c(328898.... protein_coding
#> 2 havana GRCh37 c(328898.... protein_coding
#> 3 havana GRCh37 c("core".... nonsense_mediated_decay
#> 4 havana GRCh37 c("13", .... nonsense_mediated_decay
#> 5 havana GRCh37 c("core".... retained_intron
#> 6 ensembl GRCh37 c("core".... protein_coding
#> id object_type end is_canonical seq_region_name start
#> 1 ENST00000380152 Transcript 32973347 0 13 32889611
#> 2 ENST00000530893 Transcript 32907428 0 13 32889642
#> 3 ENST00000528762 Transcript 32953632 0 13 32945108
#> 4 ENST00000470094 Transcript 32972409 0 13 32953977
#> 5 ENST00000533776 Transcript 32972585 0 13 32970946
#> 6 ENST00000544455 Transcript 32973805 1 13 32889617
#> display_name strand db_type logic_name version Parent
#> 1 BRCA2-001 1 core ensembl_havana_transcript 3 ENSG00000139618
#> 2 BRCA2-003 1 core havana_homo_sapiens_37 2 ENSG00000139618
#> 3 BRCA2-005 1 core havana_homo_sapiens_37 1 ENSG00000139618
#> 4 BRCA2-002 1 core havana_homo_sapiens_37 1 ENSG00000139618
#> 5 BRCA2-006 1 core havana_homo_sapiens_37 1 ENSG00000139618
#> 6 BRCA2-201 1 core ensembl_homo_sapiens_37 1 ENSG00000139618
#> species Translation.start Translation.end Translation.species
#> 1 homo_sapiens 32890598 32972907 homo_sapiens
#> 2 homo_sapiens 32899266 32907428 homo_sapiens
#> 3 homo_sapiens 32945108 32950807 homo_sapiens
#> 4 homo_sapiens 32953977 32970229 homo_sapiens
#> 5 homo_sapiens NA NA <NA>
#> 6 homo_sapiens 32890598 32972907 homo_sapiens
#> Translation.Parent Translation.object_type Translation.id
#> 1 ENST00000380152 Translation ENSP00000369497
#> 2 ENST00000530893 Translation ENSP00000435699
#> 3 ENST00000528762 Translation ENSP00000433168
#> 4 ENST00000470094 Translation ENSP00000434898
#> 5 <NA> <NA> <NA>
#> 6 ENST00000544455 Translation ENSP00000439902
#> Translation.version Translation.db_type Translation.length
#> 1 3 core 3418
#> 2 2 core 481
#> 3 1 core 64
#> 4 1 core 186
#> 5 NA <NA> NA
#> 6 1 core 3418
#>
#> $version
#> [1] 10
#>
#> $species
#> [1] "homo_sapiens"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $db_type
#> [1] "core"
#>
event <- "SE_17_-_41251792_41249306_41249261_41246877_BRCA1"
queryEnsemblByEvent(event, species="human", assembly="hg19")
#> $strand
#> [1] -1
#>
#> $seq_region_name
#> [1] "17"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $species
#> [1] "human"
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $version
#> [1] 15
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $end
#> [1] 41277500
#>
#> $Transcript
#> logic_name db_type is_canonical object_type version
#> 1 ensembl_havana_transcript core 0 Transcript 3
#> 2 ensembl_havana_transcript core 0 Transcript 1
#> 3 havana_homo_sapiens_37 core 0 Transcript 1
#> 4 havana_homo_sapiens_37 core 0 Transcript 1
#> 5 havana_homo_sapiens_37 core 0 Transcript 1
#> 6 ensembl_havana_transcript core 0 Transcript 1
#> 7 ensembl_havana_transcript core 1 Transcript 2
#> 8 havana_homo_sapiens_37 core 0 Transcript 1
#> 9 havana_homo_sapiens_37 core 0 Transcript 2
#> 10 havana_homo_sapiens_37 core 0 Transcript 1
#> 11 havana_homo_sapiens_37 core 0 Transcript 1
#> 12 havana_homo_sapiens_37 core 0 Transcript 1
#> 13 havana_homo_sapiens_37 core 0 Transcript 1
#> 14 havana_homo_sapiens_37 core 0 Transcript 1
#> 15 havana_homo_sapiens_37 core 0 Transcript 1
#> 16 havana_homo_sapiens_37 core 0 Transcript 1
#> 17 havana_homo_sapiens_37 core 0 Transcript 3
#> 18 havana_homo_sapiens_37 core 0 Transcript 1
#> 19 havana_homo_sapiens_37 core 0 Transcript 1
#> 20 havana_homo_sapiens_37 core 0 Transcript 1
#> 21 havana_homo_sapiens_37 core 0 Transcript 1
#> 22 havana_homo_sapiens_37 core 0 Transcript 1
#> 23 havana_homo_sapiens_37 core 0 Transcript 1
#> 24 havana_homo_sapiens_37 core 0 Transcript 1
#> 25 havana_homo_sapiens_37 core 0 Transcript 1
#> 26 havana_homo_sapiens_37 core 0 Transcript 1
#> 27 ensembl_homo_sapiens_37 core 0 Transcript 3
#> 28 ensembl_homo_sapiens_37 core 0 Transcript 3
#> 29 ensembl_homo_sapiens_37 core 0 Transcript 3
#> 30 ensembl_homo_sapiens_37 core 0 Transcript 3
#> 31 ensembl_homo_sapiens_37 core 0 Transcript 4
#> display_name id end start Parent
#> 1 BRCA1-001 ENST00000357654 41277387 41196312 ENSG00000012048
#> 2 BRCA1-007 ENST00000468300 41277468 41196822 ENSG00000012048
#> 3 BRCA1-023 ENST00000586385 41277346 41197580 ENSG00000012048
#> 4 BRCA1-024 ENST00000591534 41277346 41197580 ENSG00000012048
#> 5 BRCA1-025 ENST00000591849 41277346 41197580 ENSG00000012048
#> 6 BRCA1-006 ENST00000493795 41277419 41197646 ENSG00000012048
#> 7 BRCA1-005 ENST00000471181 41277500 41197646 ENSG00000012048
#> 8 BRCA1-010 ENST00000461221 41277305 41197695 ENSG00000012048
#> 9 BRCA1-014 ENST00000491747 41277373 41197695 ENSG00000012048
#> 10 BRCA1-015 ENST00000484087 41256933 41215361 ENSG00000012048
#> 11 BRCA1-009 ENST00000478531 41277376 41215361 ENSG00000012048
#> 12 BRCA1-008 ENST00000493919 41277419 41215377 ENSG00000012048
#> 13 BRCA1-021 ENST00000472490 41223083 41219291 ENSG00000012048
#> 14 BRCA1-019 ENST00000487825 41256933 41228505 ENSG00000012048
#> 15 BRCA1-022 ENST00000461574 41243841 41228554 ENSG00000012048
#> 16 BRCA1-012 ENST00000467274 41277332 41243115 ENSG00000012048
#> 17 BRCA1-026 ENST00000412061 41247883 41245587 ENSG00000012048
#> 18 BRCA1-011 ENST00000470026 41277340 41245601 ENSG00000012048
#> 19 BRCA1-004 ENST00000477152 41277381 41245603 ENSG00000012048
#> 20 BRCA1-002 ENST00000492859 41277317 41246129 ENSG00000012048
#> 21 BRCA1-003 ENST00000497488 41277317 41246129 ENSG00000012048
#> 22 BRCA1-013 ENST00000494123 41277467 41246129 ENSG00000012048
#> 23 BRCA1-018 ENST00000473961 41256908 41246187 ENSG00000012048
#> 24 BRCA1-017 ENST00000476777 41277370 41247863 ENSG00000012048
#> 25 BRCA1-020 ENST00000461798 41277387 41251848 ENSG00000012048
#> 26 BRCA1-016 ENST00000489037 41277338 41256206 ENSG00000012048
#> 27 BRCA1-205 ENST00000354071 41277500 41196313 ENSG00000012048
#> 28 BRCA1-204 ENST00000352993 41277500 41196313 ENSG00000012048
#> 29 BRCA1-202 ENST00000346315 41277468 41196313 ENSG00000012048
#> 30 BRCA1-203 ENST00000351666 41276132 41196313 ENSG00000012048
#> 31 BRCA1-201 ENST00000309486 41277468 41196313 ENSG00000012048
#> Translation.object_type Translation.db_type Translation.species
#> 1 Translation core human
#> 2 Translation core human
#> 3 Translation core human
#> 4 Translation core human
#> 5 Translation core human
#> 6 Translation core human
#> 7 Translation core human
#> 8 Translation core human
#> 9 Translation core human
#> 10 Translation core human
#> 11 Translation core human
#> 12 Translation core human
#> 13 <NA> <NA> <NA>
#> 14 Translation core human
#> 15 Translation core human
#> 16 <NA> <NA> <NA>
#> 17 Translation core human
#> 18 Translation core human
#> 19 Translation core human
#> 20 Translation core human
#> 21 Translation core human
#> 22 Translation core human
#> 23 Translation core human
#> 24 Translation core human
#> 25 Translation core human
#> 26 Translation core human
#> 27 Translation core human
#> 28 Translation core human
#> 29 Translation core human
#> 30 Translation core human
#> 31 Translation core human
#> Translation.Parent Translation.start Translation.length Translation.version
#> 1 ENST00000357654 41197695 1863 3
#> 2 ENST00000468300 41197801 699 1
#> 3 ENST00000586385 41197695 173 1
#> 4 ENST00000591534 41197695 354 1
#> 5 ENST00000591849 41197695 96 1
#> 6 ENST00000493795 41197695 1816 1
#> 7 ENST00000471181 41197695 1884 2
#> 8 ENST00000461221 41256972 63 1
#> 9 ENST00000491747 41197695 759 2
#> 10 ENST00000484087 41215361 498 1
#> 11 ENST00000478531 41215361 623 1
#> 12 ENST00000493919 41215377 572 1
#> 13 <NA> NA NA NA
#> 14 ENST00000487825 41228505 266 1
#> 15 ENST00000461574 41228554 242 1
#> 16 <NA> NA NA NA
#> 17 ENST00000412061 41245587 437 3
#> 18 ENST00000470026 41245601 649 1
#> 19 ENST00000477152 41245603 622 1
#> 20 ENST00000492859 41262552 59 1
#> 21 ENST00000497488 41246129 177 1
#> 22 ENST00000494123 41246129 473 1
#> 23 ENST00000473961 41246187 319 1
#> 24 ENST00000476777 41247863 222 1
#> 25 ENST00000461798 41256972 63 1
#> 26 ENST00000489037 41256206 98 1
#> 27 ENST00000354071 41197695 1598 6
#> 28 ENST00000352993 41197695 721 5
#> 29 ENST00000346315 41197695 1624 4
#> 30 ENST00000351666 41197695 680 3
#> 31 ENST00000309486 41197695 1567 4
#> Translation.end Translation.id seq_region_name strand species assembly_name
#> 1 41276113 ENSP00000350283 17 -1 human GRCh37
#> 2 41276113 ENSP00000417148 17 -1 human GRCh37
#> 3 41277202 ENSP00000465818 17 -1 human GRCh37
#> 4 41226495 ENSP00000467329 17 -1 human GRCh37
#> 5 41202109 ENSP00000465347 17 -1 human GRCh37
#> 6 41258543 ENSP00000418775 17 -1 human GRCh37
#> 7 41276113 ENSP00000418960 17 -1 human GRCh37
#> 8 41276113 ENSP00000418548 17 -1 human GRCh37
#> 9 41276113 ENSP00000420705 17 -1 human GRCh37
#> 10 41256933 ENSP00000419481 17 -1 human GRCh37
#> 11 41276113 ENSP00000420412 17 -1 human GRCh37
#> 12 41258543 ENSP00000418819 17 -1 human GRCh37
#> 13 NA <NA> 17 -1 human GRCh37
#> 14 41256933 ENSP00000418212 17 -1 human GRCh37
#> 15 41243841 ENSP00000417241 17 -1 human GRCh37
#> 16 NA <NA> 17 -1 human GRCh37
#> 17 41247883 ENSP00000397145 17 -1 human GRCh37
#> 18 41276113 ENSP00000419274 17 -1 human GRCh37
#> 19 41276113 ENSP00000419988 17 -1 human GRCh37
#> 20 41276113 ENSP00000420253 17 -1 human GRCh37
#> 21 41246659 ENSP00000418986 17 -1 human GRCh37
#> 22 41276113 ENSP00000419103 17 -1 human GRCh37
#> 23 41256908 ENSP00000420201 17 -1 human GRCh37
#> 24 41276113 ENSP00000417554 17 -1 human GRCh37
#> 25 41276113 ENSP00000417988 17 -1 human GRCh37
#> 26 41276113 ENSP00000420781 17 -1 human GRCh37
#> 27 41276113 ENSP00000326002 17 -1 human GRCh37
#> 28 41276113 ENSP00000312236 17 -1 human GRCh37
#> 29 41276113 ENSP00000246907 17 -1 human GRCh37
#> 30 41276113 ENSP00000338007 17 -1 human GRCh37
#> 31 41246659 ENSP00000310938 17 -1 human GRCh37
#> Exon biotype source
#> 1 c(1, 1, .... protein_coding ensembl_havana
#> 2 c(1, 1, .... protein_coding ensembl_havana
#> 3 c("human.... protein_coding havana
#> 4 c("17", .... protein_coding havana
#> 5 c(412772.... protein_coding havana
#> 6 c("Exon".... protein_coding ensembl_havana
#> 7 c("human.... protein_coding ensembl_havana
#> 8 c(412771.... nonsense_mediated_decay havana
#> 9 c("GRCh3.... protein_coding havana
#> 10 c("Exon".... protein_coding havana
#> 11 c(1, 1, .... protein_coding havana
#> 12 c("GRCh3.... protein_coding havana
#> 13 c("Exon".... retained_intron havana
#> 14 c("Exon".... protein_coding havana
#> 15 c("GRCh3.... protein_coding havana
#> 16 c(412772.... retained_intron havana
#> 17 c("Exon".... non_stop_decay havana
#> 18 c(-1, -1.... protein_coding havana
#> 19 c("Exon".... protein_coding havana
#> 20 c(412772.... nonsense_mediated_decay havana
#> 21 c(412772.... protein_coding havana
#> 22 c(412772.... protein_coding havana
#> 23 c("GRCh3.... protein_coding havana
#> 24 c(412773.... protein_coding havana
#> 25 c(412772.... nonsense_mediated_decay havana
#> 26 c("ENSE0.... protein_coding havana
#> 27 c(412772.... protein_coding ensembl
#> 28 c("core".... protein_coding ensembl
#> 29 c(412772.... protein_coding ensembl
#> 30 c("Exon".... protein_coding ensembl
#> 31 c(412772.... protein_coding ensembl
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $start
#> [1] 41196312
#>
#> $db_type
#> [1] "core"
#>
#> $object_type
#> [1] "Gene"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>