Query information from Ensembl
Usage
queryEnsemblByGene(gene, species = NULL, assembly = NULL)
queryEnsemblByEvent(event, species = NULL, assembly = NULL, data = NULL)See also
Other functions to retrieve external information:
ensemblToUniprot(),
plotProtein(),
plotTranscripts()
Examples
queryEnsemblByGene("BRCA1", "human", "hg19")
#> $display_name
#> [1] "BRCA1"
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $start
#> [1] 41196312
#>
#> $strand
#> [1] -1
#>
#> $Transcript
#> start Translation.Parent Translation.version Translation.db_type
#> 1 41196312 ENST00000357654 3 core
#> 2 41196822 ENST00000468300 1 core
#> 3 41197580 ENST00000586385 1 core
#> 4 41197580 ENST00000591534 1 core
#> 5 41197580 ENST00000591849 1 core
#> 6 41197646 ENST00000493795 1 core
#> 7 41197646 ENST00000471181 2 core
#> 8 41197695 ENST00000461221 1 core
#> 9 41197695 ENST00000491747 2 core
#> 10 41215361 ENST00000484087 1 core
#> 11 41215361 ENST00000478531 1 core
#> 12 41215377 ENST00000493919 1 core
#> 13 41219291 <NA> NA <NA>
#> 14 41228505 ENST00000487825 1 core
#> 15 41228554 ENST00000461574 1 core
#> 16 41243115 <NA> NA <NA>
#> 17 41245587 ENST00000412061 3 core
#> 18 41245601 ENST00000470026 1 core
#> 19 41245603 ENST00000477152 1 core
#> 20 41246129 ENST00000492859 1 core
#> 21 41246129 ENST00000497488 1 core
#> 22 41246129 ENST00000494123 1 core
#> 23 41246187 ENST00000473961 1 core
#> 24 41247863 ENST00000476777 1 core
#> 25 41251848 ENST00000461798 1 core
#> 26 41256206 ENST00000489037 1 core
#> 27 41196313 ENST00000354071 6 core
#> 28 41196313 ENST00000352993 5 core
#> 29 41196313 ENST00000346315 4 core
#> 30 41196313 ENST00000351666 3 core
#> 31 41196313 ENST00000309486 4 core
#> Translation.id Translation.start Translation.end Translation.species
#> 1 ENSP00000350283 41197695 41276113 human
#> 2 ENSP00000417148 41197801 41276113 human
#> 3 ENSP00000465818 41197695 41277202 human
#> 4 ENSP00000467329 41197695 41226495 human
#> 5 ENSP00000465347 41197695 41202109 human
#> 6 ENSP00000418775 41197695 41258543 human
#> 7 ENSP00000418960 41197695 41276113 human
#> 8 ENSP00000418548 41256972 41276113 human
#> 9 ENSP00000420705 41197695 41276113 human
#> 10 ENSP00000419481 41215361 41256933 human
#> 11 ENSP00000420412 41215361 41276113 human
#> 12 ENSP00000418819 41215377 41258543 human
#> 13 <NA> NA NA <NA>
#> 14 ENSP00000418212 41228505 41256933 human
#> 15 ENSP00000417241 41228554 41243841 human
#> 16 <NA> NA NA <NA>
#> 17 ENSP00000397145 41245587 41247883 human
#> 18 ENSP00000419274 41245601 41276113 human
#> 19 ENSP00000419988 41245603 41276113 human
#> 20 ENSP00000420253 41262552 41276113 human
#> 21 ENSP00000418986 41246129 41246659 human
#> 22 ENSP00000419103 41246129 41276113 human
#> 23 ENSP00000420201 41246187 41256908 human
#> 24 ENSP00000417554 41247863 41276113 human
#> 25 ENSP00000417988 41256972 41276113 human
#> 26 ENSP00000420781 41256206 41276113 human
#> 27 ENSP00000326002 41197695 41276113 human
#> 28 ENSP00000312236 41197695 41276113 human
#> 29 ENSP00000246907 41197695 41276113 human
#> 30 ENSP00000338007 41197695 41276113 human
#> 31 ENSP00000310938 41197695 41246659 human
#> Translation.object_type Translation.length strand assembly_name display_name
#> 1 Translation 1863 -1 GRCh37 BRCA1-001
#> 2 Translation 699 -1 GRCh37 BRCA1-007
#> 3 Translation 173 -1 GRCh37 BRCA1-023
#> 4 Translation 354 -1 GRCh37 BRCA1-024
#> 5 Translation 96 -1 GRCh37 BRCA1-025
#> 6 Translation 1816 -1 GRCh37 BRCA1-006
#> 7 Translation 1884 -1 GRCh37 BRCA1-005
#> 8 Translation 63 -1 GRCh37 BRCA1-010
#> 9 Translation 759 -1 GRCh37 BRCA1-014
#> 10 Translation 498 -1 GRCh37 BRCA1-015
#> 11 Translation 623 -1 GRCh37 BRCA1-009
#> 12 Translation 572 -1 GRCh37 BRCA1-008
#> 13 <NA> NA -1 GRCh37 BRCA1-021
#> 14 Translation 266 -1 GRCh37 BRCA1-019
#> 15 Translation 242 -1 GRCh37 BRCA1-022
#> 16 <NA> NA -1 GRCh37 BRCA1-012
#> 17 Translation 437 -1 GRCh37 BRCA1-026
#> 18 Translation 649 -1 GRCh37 BRCA1-011
#> 19 Translation 622 -1 GRCh37 BRCA1-004
#> 20 Translation 59 -1 GRCh37 BRCA1-002
#> 21 Translation 177 -1 GRCh37 BRCA1-003
#> 22 Translation 473 -1 GRCh37 BRCA1-013
#> 23 Translation 319 -1 GRCh37 BRCA1-018
#> 24 Translation 222 -1 GRCh37 BRCA1-017
#> 25 Translation 63 -1 GRCh37 BRCA1-020
#> 26 Translation 98 -1 GRCh37 BRCA1-016
#> 27 Translation 1598 -1 GRCh37 BRCA1-205
#> 28 Translation 721 -1 GRCh37 BRCA1-204
#> 29 Translation 1624 -1 GRCh37 BRCA1-202
#> 30 Translation 680 -1 GRCh37 BRCA1-203
#> 31 Translation 1567 -1 GRCh37 BRCA1-201
#> Parent length object_type end biotype db_type
#> 1 ENSG00000012048 7094 Transcript 41277387 protein_coding core
#> 2 ENSG00000012048 3273 Transcript 41277468 protein_coding core
#> 3 ENSG00000012048 781 Transcript 41277346 protein_coding core
#> 4 ENSG00000012048 1282 Transcript 41277346 protein_coding core
#> 5 ENSG00000012048 563 Transcript 41277346 protein_coding core
#> 6 ENSG00000012048 5732 Transcript 41277419 protein_coding core
#> 7 ENSG00000012048 5936 Transcript 41277500 protein_coding core
#> 8 ENSG00000012048 5693 Transcript 41277305 nonsense_mediated_decay core
#> 9 ENSG00000012048 2379 Transcript 41277373 protein_coding core
#> 10 ENSG00000012048 1495 Transcript 41256933 protein_coding core
#> 11 ENSG00000012048 1972 Transcript 41277376 protein_coding core
#> 12 ENSG00000012048 1948 Transcript 41277419 protein_coding core
#> 13 ENSG00000012048 561 Transcript 41223083 retained_intron core
#> 14 ENSG00000012048 800 Transcript 41256933 protein_coding core
#> 15 ENSG00000012048 726 Transcript 41243841 protein_coding core
#> 16 ENSG00000012048 4497 Transcript 41277332 retained_intron core
#> 17 ENSG00000012048 1312 Transcript 41247883 non_stop_decay core
#> 18 ENSG00000012048 2108 Transcript 41277340 protein_coding core
#> 19 ENSG00000012048 1980 Transcript 41277381 protein_coding core
#> 20 ENSG00000012048 1584 Transcript 41277317 nonsense_mediated_decay core
#> 21 ENSG00000012048 779 Transcript 41277317 protein_coding core
#> 22 ENSG00000012048 1612 Transcript 41277467 protein_coding core
#> 23 ENSG00000012048 958 Transcript 41256908 protein_coding core
#> 24 ENSG00000012048 769 Transcript 41277370 protein_coding core
#> 25 ENSG00000012048 582 Transcript 41277387 nonsense_mediated_decay core
#> 26 ENSG00000012048 455 Transcript 41277338 protein_coding core
#> 27 ENSG00000012048 6411 Transcript 41277500 protein_coding core
#> 28 ENSG00000012048 3780 Transcript 41277500 protein_coding core
#> 29 ENSG00000012048 6451 Transcript 41277468 protein_coding core
#> 30 ENSG00000012048 3444 Transcript 41276132 protein_coding core
#> 31 ENSG00000012048 7114 Transcript 41277468 protein_coding core
#> id seq_region_name version species source Exon
#> 1 ENST00000357654 17 3 human ensembl_havana c("human....
#> 2 ENST00000468300 17 1 human ensembl_havana c(412774....
#> 3 ENST00000586385 17 1 human havana c("Exon"....
#> 4 ENST00000591534 17 1 human havana c(412772....
#> 5 ENST00000591849 17 1 human havana c("ENSE0....
#> 6 ENST00000493795 17 1 human ensembl_havana c(412774....
#> 7 ENST00000471181 17 2 human ensembl_havana c("core"....
#> 8 ENST00000461221 17 1 human havana c(412771....
#> 9 ENST00000491747 17 2 human havana c("Exon"....
#> 10 ENST00000484087 17 1 human havana c(-1, -1....
#> 11 ENST00000478531 17 1 human havana c("GRCh3....
#> 12 ENST00000493919 17 1 human havana c("GRCh3....
#> 13 ENST00000472490 17 1 human havana c("human....
#> 14 ENST00000487825 17 1 human havana c(1, 1, ....
#> 15 ENST00000461574 17 1 human havana c(412438....
#> 16 ENST00000467274 17 1 human havana c(412773....
#> 17 ENST00000412061 17 3 human havana c(1, 1),....
#> 18 ENST00000470026 17 1 human havana c("GRCh3....
#> 19 ENST00000477152 17 1 human havana c("GRCh3....
#> 20 ENST00000492859 17 1 human havana c("human....
#> 21 ENST00000497488 17 1 human havana c(412772....
#> 22 ENST00000494123 17 1 human havana c("GRCh3....
#> 23 ENST00000473961 17 1 human havana c(1, 1, ....
#> 24 ENST00000476777 17 1 human havana c(412773....
#> 25 ENST00000461798 17 1 human havana c("GRCh3....
#> 26 ENST00000489037 17 1 human havana c("human....
#> 27 ENST00000354071 17 3 human ensembl c(412772....
#> 28 ENST00000352993 17 3 human ensembl c("human....
#> 29 ENST00000346315 17 3 human ensembl c(1, 1, ....
#> 30 ENST00000351666 17 3 human ensembl c("human....
#> 31 ENST00000309486 17 4 human ensembl c("human....
#> logic_name is_canonical gencode_primary
#> 1 ensembl_havana_transcript 0 0
#> 2 ensembl_havana_transcript 0 0
#> 3 havana_homo_sapiens_37 0 0
#> 4 havana_homo_sapiens_37 0 0
#> 5 havana_homo_sapiens_37 0 0
#> 6 ensembl_havana_transcript 0 0
#> 7 ensembl_havana_transcript 1 0
#> 8 havana_homo_sapiens_37 0 0
#> 9 havana_homo_sapiens_37 0 0
#> 10 havana_homo_sapiens_37 0 0
#> 11 havana_homo_sapiens_37 0 0
#> 12 havana_homo_sapiens_37 0 0
#> 13 havana_homo_sapiens_37 0 0
#> 14 havana_homo_sapiens_37 0 0
#> 15 havana_homo_sapiens_37 0 0
#> 16 havana_homo_sapiens_37 0 0
#> 17 havana_homo_sapiens_37 0 0
#> 18 havana_homo_sapiens_37 0 0
#> 19 havana_homo_sapiens_37 0 0
#> 20 havana_homo_sapiens_37 0 0
#> 21 havana_homo_sapiens_37 0 0
#> 22 havana_homo_sapiens_37 0 0
#> 23 havana_homo_sapiens_37 0 0
#> 24 havana_homo_sapiens_37 0 0
#> 25 havana_homo_sapiens_37 0 0
#> 26 havana_homo_sapiens_37 0 0
#> 27 ensembl_homo_sapiens_37 0 0
#> 28 ensembl_homo_sapiens_37 0 0
#> 29 ensembl_homo_sapiens_37 0 0
#> 30 ensembl_homo_sapiens_37 0 0
#> 31 ensembl_homo_sapiens_37 0 0
#>
#> $end
#> [1] 41277500
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $object_type
#> [1] "Gene"
#>
#> $version
#> [1] 15
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $seq_region_name
#> [1] "17"
#>
#> $db_type
#> [1] "core"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $species
#> [1] "human"
#>
queryEnsemblByGene("ENSG00000139618")
#> $version
#> [1] 10
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $display_name
#> [1] "BRCA2"
#>
#> $end
#> [1] 32973805
#>
#> $start
#> [1] 32889611
#>
#> $seq_region_name
#> [1] "13"
#>
#> $db_type
#> [1] "core"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $object_type
#> [1] "Gene"
#>
#> $canonical_transcript
#> [1] "ENST00000544455.1"
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $Transcript
#> id Exon source species gencode_primary
#> 1 ENST00000380152 c("homo_.... ensembl_havana homo_sapiens 0
#> 2 ENST00000530893 c("GRCh3.... havana homo_sapiens 0
#> 3 ENST00000528762 c(329451.... havana homo_sapiens 0
#> 4 ENST00000470094 c("core".... havana homo_sapiens 0
#> 5 ENST00000533776 c("ENSE0.... havana homo_sapiens 0
#> 6 ENST00000544455 c("GRCh3.... ensembl homo_sapiens 0
#> strand end display_name start Translation.length Translation.version
#> 1 1 32973347 BRCA2-001 32889611 3418 3
#> 2 1 32907428 BRCA2-003 32889642 481 2
#> 3 1 32953632 BRCA2-005 32945108 64 1
#> 4 1 32972409 BRCA2-002 32953977 186 1
#> 5 1 32972585 BRCA2-006 32970946 NA NA
#> 6 1 32973805 BRCA2-201 32889617 3418 1
#> Translation.end Translation.id Translation.start Translation.db_type
#> 1 32972907 ENSP00000369497 32890598 core
#> 2 32907428 ENSP00000435699 32899266 core
#> 3 32950807 ENSP00000433168 32945108 core
#> 4 32970229 ENSP00000434898 32953977 core
#> 5 NA <NA> NA <NA>
#> 6 32972907 ENSP00000439902 32890598 core
#> Translation.species Translation.object_type Translation.Parent version length
#> 1 homo_sapiens Translation ENST00000380152 3 10930
#> 2 homo_sapiens Translation ENST00000530893 2 2011
#> 3 homo_sapiens Translation ENST00000528762 1 495
#> 4 homo_sapiens Translation ENST00000470094 1 842
#> 5 <NA> <NA> <NA> 1 523
#> 6 homo_sapiens Translation ENST00000544455 1 10984
#> assembly_name object_type Parent biotype
#> 1 GRCh37 Transcript ENSG00000139618 protein_coding
#> 2 GRCh37 Transcript ENSG00000139618 protein_coding
#> 3 GRCh37 Transcript ENSG00000139618 nonsense_mediated_decay
#> 4 GRCh37 Transcript ENSG00000139618 nonsense_mediated_decay
#> 5 GRCh37 Transcript ENSG00000139618 retained_intron
#> 6 GRCh37 Transcript ENSG00000139618 protein_coding
#> seq_region_name is_canonical logic_name db_type
#> 1 13 0 ensembl_havana_transcript core
#> 2 13 0 havana_homo_sapiens_37 core
#> 3 13 0 havana_homo_sapiens_37 core
#> 4 13 0 havana_homo_sapiens_37 core
#> 5 13 0 havana_homo_sapiens_37 core
#> 6 13 1 ensembl_homo_sapiens_37 core
#>
#> $id
#> [1] "ENSG00000139618"
#>
#> $description
#> [1] "breast cancer 2, early onset [Source:HGNC Symbol;Acc:1101]"
#>
#> $strand
#> [1] 1
#>
#> $species
#> [1] "homo_sapiens"
#>
event <- "SE_17_-_41251792_41249306_41249261_41246877_BRCA1"
queryEnsemblByEvent(event, species="human", assembly="hg19")
#> $description
#> [1] "breast cancer 1, early onset [Source:HGNC Symbol;Acc:1100]"
#>
#> $seq_region_name
#> [1] "17"
#>
#> $object_type
#> [1] "Gene"
#>
#> $canonical_transcript
#> [1] "ENST00000471181.2"
#>
#> $species
#> [1] "human"
#>
#> $id
#> [1] "ENSG00000012048"
#>
#> $version
#> [1] 15
#>
#> $start
#> [1] 41196312
#>
#> $assembly_name
#> [1] "GRCh37"
#>
#> $end
#> [1] 41277500
#>
#> $biotype
#> [1] "protein_coding"
#>
#> $Transcript
#> is_canonical id gencode_primary version species start
#> 1 0 ENST00000357654 0 3 human 41196312
#> 2 0 ENST00000468300 0 1 human 41196822
#> 3 0 ENST00000586385 0 1 human 41197580
#> 4 0 ENST00000591534 0 1 human 41197580
#> 5 0 ENST00000591849 0 1 human 41197580
#> 6 0 ENST00000493795 0 1 human 41197646
#> 7 1 ENST00000471181 0 2 human 41197646
#> 8 0 ENST00000461221 0 1 human 41197695
#> 9 0 ENST00000491747 0 2 human 41197695
#> 10 0 ENST00000484087 0 1 human 41215361
#> 11 0 ENST00000478531 0 1 human 41215361
#> 12 0 ENST00000493919 0 1 human 41215377
#> 13 0 ENST00000472490 0 1 human 41219291
#> 14 0 ENST00000487825 0 1 human 41228505
#> 15 0 ENST00000461574 0 1 human 41228554
#> 16 0 ENST00000467274 0 1 human 41243115
#> 17 0 ENST00000412061 0 3 human 41245587
#> 18 0 ENST00000470026 0 1 human 41245601
#> 19 0 ENST00000477152 0 1 human 41245603
#> 20 0 ENST00000492859 0 1 human 41246129
#> 21 0 ENST00000497488 0 1 human 41246129
#> 22 0 ENST00000494123 0 1 human 41246129
#> 23 0 ENST00000473961 0 1 human 41246187
#> 24 0 ENST00000476777 0 1 human 41247863
#> 25 0 ENST00000461798 0 1 human 41251848
#> 26 0 ENST00000489037 0 1 human 41256206
#> 27 0 ENST00000354071 0 3 human 41196313
#> 28 0 ENST00000352993 0 3 human 41196313
#> 29 0 ENST00000346315 0 3 human 41196313
#> 30 0 ENST00000351666 0 3 human 41196313
#> 31 0 ENST00000309486 0 4 human 41196313
#> end biotype assembly_name strand source
#> 1 41277387 protein_coding GRCh37 -1 ensembl_havana
#> 2 41277468 protein_coding GRCh37 -1 ensembl_havana
#> 3 41277346 protein_coding GRCh37 -1 havana
#> 4 41277346 protein_coding GRCh37 -1 havana
#> 5 41277346 protein_coding GRCh37 -1 havana
#> 6 41277419 protein_coding GRCh37 -1 ensembl_havana
#> 7 41277500 protein_coding GRCh37 -1 ensembl_havana
#> 8 41277305 nonsense_mediated_decay GRCh37 -1 havana
#> 9 41277373 protein_coding GRCh37 -1 havana
#> 10 41256933 protein_coding GRCh37 -1 havana
#> 11 41277376 protein_coding GRCh37 -1 havana
#> 12 41277419 protein_coding GRCh37 -1 havana
#> 13 41223083 retained_intron GRCh37 -1 havana
#> 14 41256933 protein_coding GRCh37 -1 havana
#> 15 41243841 protein_coding GRCh37 -1 havana
#> 16 41277332 retained_intron GRCh37 -1 havana
#> 17 41247883 non_stop_decay GRCh37 -1 havana
#> 18 41277340 protein_coding GRCh37 -1 havana
#> 19 41277381 protein_coding GRCh37 -1 havana
#> 20 41277317 nonsense_mediated_decay GRCh37 -1 havana
#> 21 41277317 protein_coding GRCh37 -1 havana
#> 22 41277467 protein_coding GRCh37 -1 havana
#> 23 41256908 protein_coding GRCh37 -1 havana
#> 24 41277370 protein_coding GRCh37 -1 havana
#> 25 41277387 nonsense_mediated_decay GRCh37 -1 havana
#> 26 41277338 protein_coding GRCh37 -1 havana
#> 27 41277500 protein_coding GRCh37 -1 ensembl
#> 28 41277500 protein_coding GRCh37 -1 ensembl
#> 29 41277468 protein_coding GRCh37 -1 ensembl
#> 30 41276132 protein_coding GRCh37 -1 ensembl
#> 31 41277468 protein_coding GRCh37 -1 ensembl
#> display_name db_type logic_name length seq_region_name
#> 1 BRCA1-001 core ensembl_havana_transcript 7094 17
#> 2 BRCA1-007 core ensembl_havana_transcript 3273 17
#> 3 BRCA1-023 core havana_homo_sapiens_37 781 17
#> 4 BRCA1-024 core havana_homo_sapiens_37 1282 17
#> 5 BRCA1-025 core havana_homo_sapiens_37 563 17
#> 6 BRCA1-006 core ensembl_havana_transcript 5732 17
#> 7 BRCA1-005 core ensembl_havana_transcript 5936 17
#> 8 BRCA1-010 core havana_homo_sapiens_37 5693 17
#> 9 BRCA1-014 core havana_homo_sapiens_37 2379 17
#> 10 BRCA1-015 core havana_homo_sapiens_37 1495 17
#> 11 BRCA1-009 core havana_homo_sapiens_37 1972 17
#> 12 BRCA1-008 core havana_homo_sapiens_37 1948 17
#> 13 BRCA1-021 core havana_homo_sapiens_37 561 17
#> 14 BRCA1-019 core havana_homo_sapiens_37 800 17
#> 15 BRCA1-022 core havana_homo_sapiens_37 726 17
#> 16 BRCA1-012 core havana_homo_sapiens_37 4497 17
#> 17 BRCA1-026 core havana_homo_sapiens_37 1312 17
#> 18 BRCA1-011 core havana_homo_sapiens_37 2108 17
#> 19 BRCA1-004 core havana_homo_sapiens_37 1980 17
#> 20 BRCA1-002 core havana_homo_sapiens_37 1584 17
#> 21 BRCA1-003 core havana_homo_sapiens_37 779 17
#> 22 BRCA1-013 core havana_homo_sapiens_37 1612 17
#> 23 BRCA1-018 core havana_homo_sapiens_37 958 17
#> 24 BRCA1-017 core havana_homo_sapiens_37 769 17
#> 25 BRCA1-020 core havana_homo_sapiens_37 582 17
#> 26 BRCA1-016 core havana_homo_sapiens_37 455 17
#> 27 BRCA1-205 core ensembl_homo_sapiens_37 6411 17
#> 28 BRCA1-204 core ensembl_homo_sapiens_37 3780 17
#> 29 BRCA1-202 core ensembl_homo_sapiens_37 6451 17
#> 30 BRCA1-203 core ensembl_homo_sapiens_37 3444 17
#> 31 BRCA1-201 core ensembl_homo_sapiens_37 7114 17
#> Parent Translation.Parent Translation.end Translation.species
#> 1 ENSG00000012048 ENST00000357654 41276113 human
#> 2 ENSG00000012048 ENST00000468300 41276113 human
#> 3 ENSG00000012048 ENST00000586385 41277202 human
#> 4 ENSG00000012048 ENST00000591534 41226495 human
#> 5 ENSG00000012048 ENST00000591849 41202109 human
#> 6 ENSG00000012048 ENST00000493795 41258543 human
#> 7 ENSG00000012048 ENST00000471181 41276113 human
#> 8 ENSG00000012048 ENST00000461221 41276113 human
#> 9 ENSG00000012048 ENST00000491747 41276113 human
#> 10 ENSG00000012048 ENST00000484087 41256933 human
#> 11 ENSG00000012048 ENST00000478531 41276113 human
#> 12 ENSG00000012048 ENST00000493919 41258543 human
#> 13 ENSG00000012048 <NA> NA <NA>
#> 14 ENSG00000012048 ENST00000487825 41256933 human
#> 15 ENSG00000012048 ENST00000461574 41243841 human
#> 16 ENSG00000012048 <NA> NA <NA>
#> 17 ENSG00000012048 ENST00000412061 41247883 human
#> 18 ENSG00000012048 ENST00000470026 41276113 human
#> 19 ENSG00000012048 ENST00000477152 41276113 human
#> 20 ENSG00000012048 ENST00000492859 41276113 human
#> 21 ENSG00000012048 ENST00000497488 41246659 human
#> 22 ENSG00000012048 ENST00000494123 41276113 human
#> 23 ENSG00000012048 ENST00000473961 41256908 human
#> 24 ENSG00000012048 ENST00000476777 41276113 human
#> 25 ENSG00000012048 ENST00000461798 41276113 human
#> 26 ENSG00000012048 ENST00000489037 41276113 human
#> 27 ENSG00000012048 ENST00000354071 41276113 human
#> 28 ENSG00000012048 ENST00000352993 41276113 human
#> 29 ENSG00000012048 ENST00000346315 41276113 human
#> 30 ENSG00000012048 ENST00000351666 41276113 human
#> 31 ENSG00000012048 ENST00000309486 41246659 human
#> Translation.start Translation.id Translation.version Translation.length
#> 1 41197695 ENSP00000350283 3 1863
#> 2 41197801 ENSP00000417148 1 699
#> 3 41197695 ENSP00000465818 1 173
#> 4 41197695 ENSP00000467329 1 354
#> 5 41197695 ENSP00000465347 1 96
#> 6 41197695 ENSP00000418775 1 1816
#> 7 41197695 ENSP00000418960 2 1884
#> 8 41256972 ENSP00000418548 1 63
#> 9 41197695 ENSP00000420705 2 759
#> 10 41215361 ENSP00000419481 1 498
#> 11 41215361 ENSP00000420412 1 623
#> 12 41215377 ENSP00000418819 1 572
#> 13 NA <NA> NA NA
#> 14 41228505 ENSP00000418212 1 266
#> 15 41228554 ENSP00000417241 1 242
#> 16 NA <NA> NA NA
#> 17 41245587 ENSP00000397145 3 437
#> 18 41245601 ENSP00000419274 1 649
#> 19 41245603 ENSP00000419988 1 622
#> 20 41262552 ENSP00000420253 1 59
#> 21 41246129 ENSP00000418986 1 177
#> 22 41246129 ENSP00000419103 1 473
#> 23 41246187 ENSP00000420201 1 319
#> 24 41247863 ENSP00000417554 1 222
#> 25 41256972 ENSP00000417988 1 63
#> 26 41256206 ENSP00000420781 1 98
#> 27 41197695 ENSP00000326002 6 1598
#> 28 41197695 ENSP00000312236 5 721
#> 29 41197695 ENSP00000246907 4 1624
#> 30 41197695 ENSP00000338007 3 680
#> 31 41197695 ENSP00000310938 4 1567
#> Translation.object_type Translation.db_type object_type Exon
#> 1 Translation core Transcript c(412772....
#> 2 Translation core Transcript c(-1, -1....
#> 3 Translation core Transcript c("human....
#> 4 Translation core Transcript c("GRCh3....
#> 5 Translation core Transcript c("Exon"....
#> 6 Translation core Transcript c("core"....
#> 7 Translation core Transcript c("human....
#> 8 Translation core Transcript c(-1, -1....
#> 9 Translation core Transcript c(-1, -1....
#> 10 Translation core Transcript c(1, 1, ....
#> 11 Translation core Transcript c("human....
#> 12 Translation core Transcript c("GRCh3....
#> 13 <NA> <NA> Transcript c("ENSE0....
#> 14 Translation core Transcript c(-1, -1....
#> 15 Translation core Transcript c(-1, -1....
#> 16 <NA> <NA> Transcript c("17", ....
#> 17 Translation core Transcript c("17", ....
#> 18 Translation core Transcript c("GRCh3....
#> 19 Translation core Transcript c("core"....
#> 20 Translation core Transcript c("human....
#> 21 Translation core Transcript c("Exon"....
#> 22 Translation core Transcript c(1, 1, ....
#> 23 Translation core Transcript c("17", ....
#> 24 Translation core Transcript c("ENSE0....
#> 25 Translation core Transcript c(-1, -1....
#> 26 Translation core Transcript c("17", ....
#> 27 Translation core Transcript c("GRCh3....
#> 28 Translation core Transcript c(-1, -1....
#> 29 Translation core Transcript c(-1, -1....
#> 30 Translation core Transcript c(-1, -1....
#> 31 Translation core Transcript c("GRCh3....
#>
#> $strand
#> [1] -1
#>
#> $source
#> [1] "ensembl_havana"
#>
#> $db_type
#> [1] "core"
#>
#> $display_name
#> [1] "BRCA1"
#>
#> $logic_name
#> [1] "ensembl_havana_gene_homo_sapiens_37"
#>