Plot transcripts — plotTranscripts • psichomics

Plot transcripts

Usage

plotTranscripts(
  info,
  eventPosition = NULL,
  event = NULL,
  eventData = NULL,
  shiny = FALSE
)

Arguments

info: Information retrieved from Ensembl
eventPosition: Numeric: coordinates of the alternative splicing event (ignored if event is set)
event: Character: identifier of the alternative splicing event to plot
eventData: Object containing event information to be parsed
shiny: Boolean: is the function running in a Shiny session?

Value

NULL (function is only used to modify the Shiny session's state or internal variables)

See also

Other functions to retrieve external information: ensemblToUniprot(), plotProtein(), queryEnsemblByGene()

Examples

event <- "SE_12_-_7985318_7984360_7984200_7982602_SLC2A14"
info  <- queryEnsemblByEvent(event, species="human", assembly="hg19")
if (FALSE) { # \dontrun{
plotTranscripts(info, event=event)
} # }