Start graphical interface of psichomics

Usage

psichomics(
  ...,
  launch.browser = TRUE,
  shinyproxy = FALSE,
  testData = FALSE,
  cache = getAnnotationHubOption("CACHE")
)

Arguments

...

Arguments passed on to shiny::runApp

port: The TCP port that the application should listen on. If the port is not specified, and the shiny.port option is set (with options(shiny.port = XX)), then that port will be used. Otherwise, use a random port between 3000:8000, excluding ports that are blocked by Google Chrome for being considered unsafe: 3659, 4045, 5060, 5061, 6000, 6566, 6665:6669 and 6697. Up to twenty random ports will be tried.
host: The IPv4 address that the application should listen on. Defaults to the shiny.host option, if set, or "127.0.0.1" if not. See Details.
workerId: Can generally be ignored. Exists to help some editions of Shiny Server Pro route requests to the correct process.
quiet: Should Shiny status messages be shown? Defaults to FALSE.
display.mode: The mode in which to display the application. If set to the value "showcase", shows application code and metadata from a DESCRIPTION file in the application directory alongside the application. If set to "normal", displays the application normally. Defaults to "auto", which displays the application in the mode given in its DESCRIPTION file, if any.
test.mode: Should the application be launched in test mode? This is only used for recording or running automated tests. Defaults to the shiny.testmode option, or FALSE if the option is not set.

launch.browser

If true, the system's default web browser will be launched automatically after the app is started. Defaults to true in interactive sessions only. The value of this parameter can also be a function to call with the application's URL.

shinyproxy

Boolean: prepare visual interface to run in Shinyproxy?

testData

Boolean: load with test data

cache

Character: path to AnnotationHub cache (used to load alternative splicing event annotation)

Value

NULL (function is only used to modify the Shiny session's state or internal variables)

Examples

if (FALSE) { # \dontrun{
psichomics()
} # }