Download and load SRA projects via recount2
Usage
loadSRAproject(project, outdir = getDownloadsFolder())Arguments
- project
Character: SRA project identifiers (check
recount_abstract)- outdir
Character: directory to store the downloaded files
See also
Other functions associated with SRA data retrieval:
getDownloadsFolder()
Other functions to load data:
loadGtexData(),
loadLocalFiles(),
loadTCGAdata()
Examples
if (FALSE) {
View(recount::recount_abstract)
sra <- loadSRAproject("SRP053101")
names(sra)
names(sra[[1]])
}