Get CMap perturbation types
getCMapPerturbationTypes(control = FALSE)Boolean: return perturbation types used as control?
Perturbation types and respective codes as used by CMap datasets
Other functions related with the ranking of CMap perturbations:
as.table.referenceComparison(),
filterCMapMetadata(),
getCMapConditions(),
loadCMapData(),
loadCMapZscores(),
parseCMapID(),
plot.perturbationChanges(),
plot.referenceComparison(),
plotTargetingDrugsVSsimilarPerturbations(),
prepareCMapPerturbations(),
print.similarPerturbations(),
rankSimilarPerturbations()
getCMapPerturbationTypes()
#> Compound
#> "trt_cp"
#> Peptides and other biological agents (e.g. cytokine)
#> "trt_lig"
#> shRNA for loss of function (LoF) of gene
#> "trt_sh"
#> Consensus signature from shRNAs targeting the same gene
#> "trt_sh.cgs"
#> cDNA for overexpression of wild-type gene
#> "trt_oe"
#> cDNA for overexpression of mutated gene
#> "trt_oe.mut"
#> CRISPR for LLoF
#> "trt_xpr"