Get CMap perturbation types

Get CMap perturbation types

getCMapPerturbationTypes(control = FALSE)

Arguments

control

Boolean: return perturbation types used as control?

Value

Perturbation types and respective codes as used by CMap datasets

See also

Other functions related with the ranking of CMap perturbations: as.table.referenceComparison(), filterCMapMetadata(), getCMapConditions(), loadCMapData(), loadCMapZscores(), parseCMapID(), plot.perturbationChanges(), plot.referenceComparison(), plotTargetingDrugsVSsimilarPerturbations(), prepareCMapPerturbations(), print.similarPerturbations(), rankSimilarPerturbations()

Examples

getCMapPerturbationTypes()
#>                                                Compound 
#>                                                "trt_cp" 
#>    Peptides and other biological agents (e.g. cytokine) 
#>                                               "trt_lig" 
#>                shRNA for loss of function (LoF) of gene 
#>                                                "trt_sh" 
#> Consensus signature from shRNAs targeting the same gene 
#>                                            "trt_sh.cgs" 
#>               cDNA for overexpression of wild-type gene 
#>                                                "trt_oe" 
#>                 cDNA for overexpression of mutated gene 
#>                                            "trt_oe.mut" 
#>                                         CRISPR for LLoF 
#>                                               "trt_xpr"