Load CMap data via a visual interface

Source: R/shinyInterface.R

Load CMap data via a visual interface

launchCMapDataLoader(
  metadata = "cmapMetadata.txt",
  zscores = "cmapZscores.gctx",
  geneInfo = "cmapGeneInfo.txt",
  compoundInfo = "cmapCompoundInfo.txt",
  cellLine = NULL,
  timepoint = NULL,
  dosage = NULL,
  perturbationType = NULL
)

Arguments

metadata

Data frame (CMap metadata) or character (respective filepath)

zscores

Data frame (GCTX z-scores) or character (respective filepath to load data from file)

geneInfo

Data frame (CMap gene info) or character (respective filepath to load data from file)

compoundInfo

Data frame (CMap compound info) or character (respective filepath to load data from file)

cellLine

Character: cell line (if NULL, all values are loaded)

timepoint

Character: timepoint (if NULL, all values are loaded)

dosage

Character: dosage (if NULL, all values are loaded)

perturbationType

Character: type of perturbation (if NULL, all perturbation types are loaded)

Value

CMap data