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Add metadata regarding loaded datasets (for instance, path and name of files used for dataset loading, options set upon dataset creation, etc.)
Differential splicing and expression analysis:
Allow to input formulas when highlighting points; this is an improvement when plotting -log10(q-values), for instance, where it is now possible to highlight values >= -log10(0.05), i.e. q-values <= 0.5, instead of inputting an approximate value
Correlation analyses:
Colour samples by group
Render contour based on a density estimate
Display exportable table with correlation analyses
Groups:
Show group colour in group selection element
Retrieve articles from PubMed instead of PMC
Bug fixes and minor changes
Improve file browser input in remote servers:
Allow to directly input a path without using the file browser dialog
Display warning when calling the file browser dialog in RStudio Server or in an unsupported system
TCGA data:
Inform of sequencing technology used to obtain gene expression data
GTEx data:
Fix issues in downstream analyses when using GTEx data subset by tissues
Differential analysis:
Avoid limiting X axis of density plot when values outside 0 and 1 are provided, as in the case of gene expression (plotDistribution() function)
Fix filenames of exported tables from differential expression analysis incorrectly mentioning differential splicing analysis instead
Correlation analysis:
When plotting correlation analysis, loess curve was performed based on gaussian fitting, independent of the “family” argument of plotCorrelation()
Improve console logging of error and warning messages